Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC127537.2-201ENST00000439258 465 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RPL23AP44-201ENST00000482216 473 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AP002812.1-201ENST00000495378 474 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC108078.3-201ENST00000502633 489 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 SYF2P1-201ENST00000550658 413 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC138915.2-201ENST00000569776 97 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 VN1R83P-201ENST00000595685 445 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 SNRPGP15-201ENST00000600149 222 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC021749.1-201ENST00000604322 607 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 RMST_8.1-201ENST00000610287 165 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC023158.2-201ENST00000614876 543 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AL158163.2-201ENST00000619110 700 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC009318.4-201ENST00000620496 486 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AC092628.2-201ENST00000622492 339 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 CR381572.1-201ENST00000625098 102 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 AF001550.2-201ENST00000636643 217 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 LINC02211-204ENST00000642024 1070 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 UBE3AP2-201ENST00000429033 2259 ntBASIC3.51□□□□□ -1.85
DDX28Q9NUL7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
DDX28Q9NUL7 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 ZNF542P-204ENST00000482727 1305 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 Y_RNA.472-201ENST00000384322 102 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 FNDC3CP-201ENST00000420795 1155 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 MRPS36P1-201ENST00000421291 307 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RPL31P12-201ENST00000422587 358 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 GTF2IP23-201ENST00000423746 351 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RPL7P44-201ENST00000424827 742 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AL117339.2-201ENST00000430475 180 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 MOB1AP1-201ENST00000430903 535 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AL590103.1-201ENST00000434488 307 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 KCTD9P3-201ENST00000434597 1169 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RPS29P31-201ENST00000446147 164 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC108734.3-201ENST00000481241 1165 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RPS4XP13-201ENST00000483219 789 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC093767.1-201ENST00000504523 156 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 OR10V3P-201ENST00000525712 725 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 MIR4429-201ENST00000580105 73 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RN7SL600P-201ENST00000581811 299 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AL365503.1-201ENST00000605247 905 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 RNU4-89P-201ENST00000607443 133 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AL159169.3-201ENST00000608871 561 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AP001521.1-201ENST00000609150 300 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC099778.2-201ENST00000610904 211 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC231759.1-201ENST00000616455 597 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC073348.1-201ENST00000623002 331 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC090772.4-201ENST00000623599 362 ntBASIC3.5□□□□□ -1.85
DDX28Q9NUL7 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX28Q9NUL7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 AC118273.1-201ENST00000525324 3006 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 GDI2P1-201ENST00000429312 1336 ntBASIC3.49□□□□□ -1.85
DDX28Q9NUL7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.49□□□□□ -1.85
DDX28Q9NUL7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms