Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RN7SKP18-201ENST00000516005 275 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 RN7SKP141-201ENST00000516167 338 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 MIR514B-201ENST00000516774 80 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 HMGB1P23-201ENST00000518743 568 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 ERHP1-201ENST00000523006 310 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 OR4R2P-201ENST00000530815 597 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 ARL1-211ENST00000551828 776 ntTSL 5 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 MIR4646-201ENST00000580775 63 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 VN1R85P-201ENST00000601587 426 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 HTR1DP1-201ENST00000616500 888 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 uc_338.20-201ENST00000621563 178 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC010435.1-201ENST00000623353 1177 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC012640.5-201ENST00000623897 319 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 AC092159.4-201ENST00000624944 550 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 MIR4496-201ENST00000635896 61 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 CENPCP1-201ENST00000533085 2578 ntBASIC1.57□□□□□ -2.16
LINC00643Q86TS7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC1.57□□□□□ -2.16
LINC00643Q86TS7 KPNA2P1-201ENST00000458289 1591 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 ZNF519P1-201ENST00000449011 1626 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RNU1-51P-201ENST00000365345 176 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RNA5SP252-201ENST00000391131 119 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 MTND4P11-201ENST00000417020 1058 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC069213.2-201ENST00000420238 366 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC093716.1-201ENST00000435923 377 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 IGKV1OR-3-201ENST00000446944 348 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 SBDSP1-204ENST00000453858 737 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC091826.1-201ENST00000514065 313 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RN7SKP122-201ENST00000515923 296 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AP004371.1-201ENST00000525240 214 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 ANP32BP3-201ENST00000559213 706 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 COX6CP3-201ENST00000580869 223 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 GLUD1P4-201ENST00000590914 418 ntBASIC1.56□□□□□ -2.16
LINC00643Q86TS7 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
LINC00643Q86TS7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 RNA5SP138-201ENST00000365098 114 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 U8.11-201ENST00000384699 133 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 U8.12-201ENST00000384701 133 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 ERMN-204ENST00000409925 556 ntTSL 4 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 UBE2D3P2-201ENST00000424409 445 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 RPL18P10-201ENST00000425606 538 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC023141.6-201ENST00000429418 337 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 MRPS33P4-201ENST00000434892 317 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 RPS7P2-201ENST00000435134 607 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC011816.1-201ENST00000441346 546 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL035407.2-201ENST00000454090 378 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 U8.18-201ENST00000459285 133 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC008953.1-201ENST00000497334 318 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 GZMAP1-201ENST00000503054 631 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC093720.1-201ENST00000505681 714 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC110794.1-201ENST00000505816 425 ntBASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
LINC00643Q86TS7 AC092593.2-201ENST00000513866 913 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms