Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL590233.1-201ENST00000430017 456 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 HMGB3P12-201ENST00000438745 556 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC114755.5-201ENST00000447760 831 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 RN7SL809P-201ENST00000482040 297 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 NPM1P41-201ENST00000512920 831 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC012339.2-201ENST00000523996 453 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC090615.1-201ENST00000577519 154 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 MIR3667-201ENST00000581025 74 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 RN7SL435P-201ENST00000584418 282 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL353621.2-201ENST00000605340 133 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC008966.2-201ENST00000606157 453 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL596245.1-201ENST00000618994 362 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 MIR7641-1-201ENST00000627518 61 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 FER-210ENST00000628534 558 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 MTND4P29-201ENST00000503122 1372 ntBASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
RUFY4Q6ZNE9 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SDAD1P1-202ENST00000524156 2051 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNU6-249P-201ENST00000363016 102 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNU1-130P-201ENST00000363930 160 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNU6-282P-201ENST00000365357 103 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNU1-39P-201ENST00000383897 165 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SNORA70.10-201ENST00000384515 134 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNA5SP118-201ENST00000410385 109 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNA5SP113-201ENST00000410486 84 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 NUP35P2-201ENST00000416748 943 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC105402.2-201ENST00000438503 358 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC108734.1-201ENST00000439549 399 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AL049734.2-201ENST00000441066 616 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RPL5P22-201ENST00000480199 884 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC091951.2-201ENST00000500762 203 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 NIFKP7-201ENST00000503365 834 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RNU6-507P-201ENST00000516045 100 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC104383.1-201ENST00000530297 370 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC123904.2-201ENST00000548059 300 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SUB1P2-201ENST00000556401 297 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC073091.2-201ENST00000603205 907 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 AC007621.1-201ENST00000604544 437 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 STX3-208ENST00000641815 3236 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 A2MP1-204ENST00000566278 4130 ntBASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.53□□□□□ -1.52
RUFY4Q6ZNE9 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 204.5 ms