Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 IFITM8P-201ENST00000522529 394 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PHBP17-201ENST00000528576 541 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 UBE2NP1-201ENST00000545592 458 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC125611.1-201ENST00000549563 229 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PSMB7P1-201ENST00000556349 514 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 ZNF192P1-203ENST00000565888 810 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MIR4644-201ENST00000579929 84 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MIR4286-201ENST00000580651 93 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 OR4G1P-201ENST00000588632 938 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC112230.1-201ENST00000604342 547 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL592221.1-201ENST00000605266 382 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC018638.7-201ENST00000605836 1114 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL031666.3-201ENST00000609320 1006 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC007671.2-201ENST00000637344 619 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 U6.101-201ENST00000637707 76 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 ZNF37BP-203ENST00000452306 1352 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.59□□□□□ -1.84
PDLIM3Q53GG5 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PDLIM3Q53GG5 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PDLIM3Q53GG5 AC108467.2-201ENST00000617640 1597 ntBASIC3.59□□□□□ -1.84
PDLIM3Q53GG5 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.59□□□□□ -1.84
PDLIM3Q53GG5 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 SNORA71.2-201ENST00000364941 134 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 RHOT1P2-201ENST00000366423 333 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 SNORA51.6-201ENST00000384151 125 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 ARF4P3-201ENST00000397387 509 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL121972.1-201ENST00000402023 252 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 NDUFB4P4-201ENST00000404822 243 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL133384.1-201ENST00000412744 351 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC244098.2-201ENST00000422068 99 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL356387.2-201ENST00000422272 243 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 RBMY1KP-201ENST00000423480 476 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC005517.2-201ENST00000424673 553 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 RPS29P17-201ENST00000430795 166 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 PRELID3BP10-201ENST00000431957 584 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 HLA-N-201ENST00000437516 135 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 CYCSP43-201ENST00000438233 310 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC012671.1-201ENST00000451912 203 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AP003730.1-201ENST00000524605 285 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 OR4A12P-201ENST00000530847 918 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 MIR4999-201ENST00000585029 91 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AL109653.1-201ENST00000603091 248 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC007179.3-201ENST00000604976 235 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 HMGN2P28-201ENST00000606102 262 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC084757.4-201ENST00000616350 526 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC019278.1-201ENST00000623516 479 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC068057.2-201ENST00000624047 895 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AC079228.1-201ENST00000624774 1049 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 AP002907.1-201ENST00000606361 1430 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms