Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 AC110801.1-201ENST00000623590 212 ntBASIC3.69□□□□□ -1.82
PEX3P56589 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.69□□□□□ -1.82
PEX3P56589 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PEX3P56589 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PEX3P56589 CR383658.2-201ENST00000547576 1525 ntBASIC3.69□□□□□ -1.82
PEX3P56589 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
PEX3P56589 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PEX3P56589 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.68□□□□□ -1.82
PEX3P56589 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
PEX3P56589 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PEX3P56589 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.68□□□□□ -1.82
PEX3P56589 MIR30E-201ENST00000362104 92 ntBASIC3.68□□□□□ -1.82
PEX3P56589 RNA5SP267-201ENST00000364893 126 ntBASIC3.68□□□□□ -1.82
PEX3P56589 PTMAP5-201ENST00000393073 333 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AL079342.2-201ENST00000403367 482 ntBASIC3.68□□□□□ -1.82
PEX3P56589 SFR1P1-201ENST00000403720 688 ntBASIC3.68□□□□□ -1.82
PEX3P56589 HNRNPDP2-201ENST00000406475 478 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 AC009237.2-201ENST00000421358 284 ntBASIC3.68□□□□□ -1.82
PEX3P56589 RPL23AP82-202ENST00000427528 469 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC005300.1-201ENST00000428401 373 ntBASIC3.68□□□□□ -1.82
PEX3P56589 ELOCP6-201ENST00000429066 328 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.68□□□□□ -1.82
PEX3P56589 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.68□□□□□ -1.82
PEX3P56589 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 ELOCP12-201ENST00000458706 328 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC004801.2-202ENST00000463559 283 ntBASIC3.68□□□□□ -1.82
PEX3P56589 CENPBD1P1-201ENST00000464061 469 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC091153.1-201ENST00000466297 402 ntBASIC3.68□□□□□ -1.82
PEX3P56589 RPL7P38-201ENST00000488396 739 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.68□□□□□ -1.82
PEX3P56589 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 MIR2276-201ENST00000516886 89 ntBASIC3.68□□□□□ -1.82
PEX3P56589 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PEX3P56589 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.68□□□□□ -1.82
PEX3P56589 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PEX3P56589 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.68□□□□□ -1.82
PEX3P56589 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.68□□□□□ -1.82
PEX3P56589 MIR4509-3-201ENST00000578671 94 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC015917.1-201ENST00000579654 510 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.68□□□□□ -1.82
PEX3P56589 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PEX3P56589 MIR4509-2-201ENST00000583920 94 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AL354976.1-201ENST00000613843 387 ntBASIC3.68□□□□□ -1.82
PEX3P56589 MIR4509-1-201ENST00000618224 94 ntBASIC3.68□□□□□ -1.82
PEX3P56589 AL356321.1-201ENST00000621360 228 ntBASIC3.68□□□□□ -1.82
PEX3P56589 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PEX3P56589 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.68□□□□□ -1.82
PEX3P56589 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.68□□□□□ -1.82
PEX3P56589 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.68□□□□□ -1.82
PEX3P56589 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.68□□□□□ -1.82
PEX3P56589 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
PEX3P56589 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PEX3P56589 Z83843.1-201ENST00000604070 3685 ntBASIC3.67□□□□□ -1.82
PEX3P56589 RNA5SP391-201ENST00000363456 119 ntBASIC3.67□□□□□ -1.82
PEX3P56589 RNU6-707P-201ENST00000364647 95 ntBASIC3.67□□□□□ -1.82
PEX3P56589 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.67□□□□□ -1.82
PEX3P56589 HMGN1P24-201ENST00000412282 298 ntBASIC3.67□□□□□ -1.82
PEX3P56589 PRELID3BP11-201ENST00000414230 479 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.67□□□□□ -1.82
PEX3P56589 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 MRPS31P2-201ENST00000451581 518 ntBASIC3.67□□□□□ -1.82
PEX3P56589 MRPL42P4-201ENST00000453267 443 ntBASIC3.67□□□□□ -1.82
PEX3P56589 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.67□□□□□ -1.82
PEX3P56589 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.67□□□□□ -1.82
PEX3P56589 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.67□□□□□ -1.82
PEX3P56589 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 AC023632.1-201ENST00000518463 375 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.67□□□□□ -1.82
PEX3P56589 UBE2NP1-201ENST00000545592 458 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.67□□□□□ -1.82
PEX3P56589 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.67□□□□□ -1.82
PEX3P56589 RPP40P2-201ENST00000603596 712 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AC012468.1-201ENST00000604888 430 ntBASIC3.67□□□□□ -1.82
PEX3P56589 RNU4-5P-201ENST00000607255 135 ntBASIC3.67□□□□□ -1.82
PEX3P56589 AL138478.1-201ENST00000612252 832 ntBASIC3.67□□□□□ -1.82
PEX3P56589 PART1_2.1-201ENST00000612397 250 ntBASIC3.67□□□□□ -1.82
PEX3P56589 MIR8058-201ENST00000615737 89 ntBASIC3.67□□□□□ -1.82
PEX3P56589 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.67□□□□□ -1.82
PEX3P56589 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.67□□□□□ -1.82
PEX3P56589 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PEX3P56589 AC017071.1-201ENST00000564407 2204 ntBASIC3.67□□□□□ -1.82
PEX3P56589 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PEX3P56589 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.66□□□□□ -1.82
PEX3P56589 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PEX3P56589 AL133383.2-201ENST00000622958 2336 ntBASIC3.66□□□□□ -1.82
PEX3P56589 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
PEX3P56589 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PEX3P56589 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PEX3P56589 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PEX3P56589 MIR208A-201ENST00000362287 71 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms