Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC2.16□□□□□ -2.06
FOXA3P55318 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 RPS26P56-201ENST00000444468 240 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 RPL6P5-201ENST00000445678 828 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 ST13P20-201ENST00000447996 1065 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AL162389.1-201ENST00000449233 177 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 HMGB1P15-201ENST00000453854 435 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AP000705.1-201ENST00000454567 350 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RPS23P3-201ENST00000470993 430 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AP001025.2-201ENST00000490908 477 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 PRELID3BP6-201ENST00000503839 571 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.16□□□□□ -2.06
FOXA3P55318 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA3P55318 SNORD116-30-201ENST00000516468 85 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.16□□□□□ -2.06
FOXA3P55318 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA3P55318 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 NCAPGP2-201ENST00000557911 754 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA3P55318 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA3P55318 VN1R85P-201ENST00000601587 426 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AL359535.1-201ENST00000612100 1087 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 U6.48-201ENST00000618523 106 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AC002064.3-201ENST00000623448 346 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AL034408.1-202ENST00000636088 415 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
FOXA3P55318 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA3P55318 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA3P55318 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA3P55318 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
FOXA3P55318 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.06
FOXA3P55318 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA3P55318 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA3P55318 RNU6-629P-201ENST00000384061 103 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 RNU6-31P-201ENST00000384388 108 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 RNU4-47P-201ENST00000410876 114 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 AL096701.2-201ENST00000416920 238 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA3P55318 AL513175.2-201ENST00000422071 443 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 DUTP6-201ENST00000425573 462 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC005019.1-201ENST00000436455 431 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 CDC27P1-201ENST00000445384 715 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 MRPL50P4-201ENST00000446432 475 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC090525.1-201ENST00000479116 478 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA3P55318 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA3P55318 TBCAP3-201ENST00000512475 312 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC022690.1-201ENST00000526681 550 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AL133271.1-201ENST00000538229 291 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC006130.2-201ENST00000586202 326 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC245036.5-201ENST00000596330 847 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC009220.3-201ENST00000604318 586 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA3P55318 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA3P55318 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA3P55318 AC007275.1-201ENST00000621243 671 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC018692.3-201ENST00000623929 123 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 CR381653.2-201ENST00000624041 768 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 AC068724.3-201ENST00000625906 87 ntBASIC2.15□□□□□ -2.07
FOXA3P55318 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.15□□□□□ -2.07
FOXA3P55318 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA3P55318 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA3P55318 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA3P55318 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA3P55318 MIR22-201ENST00000362190 85 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA3P55318 AL139095.1-201ENST00000404326 391 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA3P55318 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 NIPA2P1-201ENST00000426223 976 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA3P55318 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA3P55318 AL035246.1-201ENST00000433554 1255 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
FOXA3P55318 TPTE2P6-202ENST00000445572 1007 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 RPL37P4-201ENST00000448908 268 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.14□□□□□ -2.07
FOXA3P55318 AC010285.1-201ENST00000470580 392 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC010301.1-201ENST00000473936 355 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 AC109925.1-201ENST00000478069 331 ntBASIC2.14□□□□□ -2.07
FOXA3P55318 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA3P55318 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA3P55318 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms