Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL078595.3-201ENST00000623815 1166 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 SNORA70B-201ENST00000384210 135 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 MIR122-201ENST00000385044 85 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 HMGB3P23-201ENST00000414981 585 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC245291.1-201ENST00000419501 328 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 DUTP6-201ENST00000425573 462 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 MYL8P-204ENST00000431574 518 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A4P53420 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 HMGB3P6-201ENST00000444896 598 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 MTND2P8-201ENST00000450555 1025 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 AC105313.1-201ENST00000509121 353 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 SNORD116-30-201ENST00000516468 85 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A4P53420 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC084824.4-201ENST00000620106 731 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 ASNSP3-201ENST00000451989 1306 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A4P53420 ELF2P3-201ENST00000445099 1506 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A4P53420 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A4P53420 AL672167.1-206ENST00000356293 943 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 RNU6-819P-201ENST00000364116 107 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 RNU6-1000P-201ENST00000391066 106 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 ANAPC10P1-201ENST00000395991 556 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 MTCO2P8-201ENST00000412213 658 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 MTCO3P30-201ENST00000426425 670 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC092634.2-201ENST00000428146 1010 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.17□□□□□ -1.9
COL4A4P53420 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A4P53420 MTND1P33-201ENST00000446251 917 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 EEF1B2P7-201ENST00000451177 676 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A4P53420 NIPA2P5-201ENST00000452282 464 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 TPTE2P5-203ENST00000458118 728 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 PRELID3BP7-201ENST00000503606 469 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 RNU6-991P-201ENST00000516168 107 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AL049874.4-201ENST00000557593 255 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 ZNF971P-201ENST00000562068 1249 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A4P53420 AC093424.1-201ENST00000604999 338 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC096586.1-201ENST00000610267 561 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC005156.1-201ENST00000613371 573 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AL162233.1-201ENST00000620014 944 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A4P53420 AC243829.7-201ENST00000633081 225 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 AC119674.1-220ENST00000641502 1048 ntBASIC3.17□□□□□ -1.9
COL4A4P53420 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 AL390862.1-201ENST00000635467 1469 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.16□□□□□ -1.9
COL4A4P53420 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.16□□□□□ -1.9
COL4A4P53420 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 ASNSP1-201ENST00000518311 1939 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
COL4A4P53420 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 SNORA63.3-201ENST00000362682 132 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 TAS2R15P-201ENST00000390674 928 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AL139039.1-201ENST00000401900 692 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A4P53420 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A4P53420 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.16□□□□□ -1.9
COL4A4P53420 AL513477.1-202ENST00000417061 214 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AL121882.1-201ENST00000422893 417 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.16□□□□□ -1.9
COL4A4P53420 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.16□□□□□ -1.9
COL4A4P53420 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.16□□□□□ -1.9
COL4A4P53420 AL591623.2-201ENST00000449978 222 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.16□□□□□ -1.9
COL4A4P53420 RPS3P1-201ENST00000456781 192 ntBASIC3.16□□□□□ -1.9
COL4A4P53420 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A4P53420 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A4P53420 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A4P53420 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms