Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL7AP6-201ENST00000477943 801 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 IGLV2-34-201ENST00000490007 283 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC008638.1-201ENST00000506035 866 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA1P49639 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC021006.3-201ENST00000530771 192 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AP000873.5-201ENST00000533906 236 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 PCMTD1P2-201ENST00000565017 355 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA1P49639 MIR4646-201ENST00000580775 63 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 MIR3667-201ENST00000581025 74 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC078795.2-201ENST00000602835 1252 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC025588.3-201ENST00000604182 274 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AL133338.2-201ENST00000604292 736 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC010857.1-201ENST00000606398 594 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AP002360.3-201ENST00000607673 710 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA1P49639 AC012360.2-201ENST00000609349 391 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC027807.2-201ENST00000616099 408 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC007546.2-201ENST00000623996 360 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA1P49639 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 C4BPAP1-201ENST00000415474 1893 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 AC130650.2-201ENST00000618736 2403 ntBASIC3.62□□□□□ -1.83
HOXA1P49639 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA1P49639 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA1P49639 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 OR11H4-201ENST00000315409 1082 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 RNA5SP151-201ENST00000365632 117 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC025750.1-201ENST00000399891 379 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 SPTLC1P2-201ENST00000407089 121 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AL133384.1-201ENST00000412744 351 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 OR8G2P-201ENST00000412796 908 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 COX6B1P1-201ENST00000415962 213 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 COX6CP15-201ENST00000426313 211 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 MTND4P6-201ENST00000438297 472 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 BMI1P1-201ENST00000445879 941 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 ST13P20-201ENST00000447996 1065 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 CFTRP1-201ENST00000456646 183 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 TPT1P7-201ENST00000458300 517 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 RPL23AP14-201ENST00000468281 468 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXA1P49639 RN7SL738P-201ENST00000470264 297 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 TSACC-207ENST00000470342 601 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA1P49639 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 ATG10-208ENST00000513634 618 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 UBE2Q2P10-201ENST00000514854 900 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 MTND5P4-201ENST00000514978 288 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA1P49639 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 AP002748.2-201ENST00000528671 348 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AL110118.1-201ENST00000553543 400 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA1P49639 AC068790.6-201ENST00000602558 258 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AL512782.1-201ENST00000603093 364 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC015871.2-201ENST00000603605 948 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC068276.1-201ENST00000605793 379 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 Z98200.1-201ENST00000607298 470 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC211433.2-201ENST00000608433 387 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC005332.10-201ENST00000612725 619 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 AC026585.1-201ENST00000619582 524 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 WDR75-207ENST00000631047 270 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA1P49639 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA1P49639 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXA1P49639 U6.98-201ENST00000637157 84 ntBASIC3.61□□□□□ -1.83
HOXA1P49639 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms