Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC090116.1-201ENST00000615679 446 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 Z99496.1-201ENST00000469424 1477 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AL356274.2-201ENST00000624379 3752 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 SNORA38.1-201ENST00000364172 131 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU6-339P-201ENST00000384310 107 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU6-1300P-201ENST00000391046 108 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 HSFY4P-201ENST00000415994 1181 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 EI24P1-201ENST00000416584 867 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC092634.6-201ENST00000418558 192 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPF2P1-201ENST00000424137 906 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC005300.1-201ENST00000428401 373 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 CYCSP32-201ENST00000440548 321 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL591503.2-201ENST00000442314 1005 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 snoU109.3-201ENST00000459477 145 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPL5P24-201ENST00000463742 885 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC104164.3-201ENST00000467363 1258 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL136126.1-201ENST00000473603 402 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC017015.1-201ENST00000477387 286 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC069499.1-201ENST00000489433 509 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC093663.1-201ENST00000497190 394 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC093752.1-206ENST00000511823 336 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 MTCO1P30-201ENST00000515244 580 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPL21P12-201ENST00000559810 515 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL157700.1-201ENST00000561973 1432 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SULT1C2P1-202ENST00000562418 459 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC106754.1-201ENST00000562632 1513 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL355812.1-201ENST00000603215 216 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC027449.1-201ENST00000608890 407 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL158196.1-201ENST00000616786 434 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 FRG1CP-201ENST00000358464 769 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RNU6-837P-201ENST00000391056 108 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 U3.39-201ENST00000408569 239 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RNA5SP56-201ENST00000410277 118 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RN7SKP53-201ENST00000411337 315 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL035410.1-201ENST00000427409 427 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RPL31P54-201ENST00000429803 370 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 GTF2IP3-201ENST00000433887 494 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MRPS18BP2-201ENST00000434310 759 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 FGF7P3-201ENST00000454645 303 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 OR5H5P-201ENST00000503164 928 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC109458.1-201ENST00000508858 316 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005921.1-201ENST00000510589 286 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTCYBP37-201ENST00000510642 1133 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTCO3P44-201ENST00000510977 541 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 HNRNPKP5-201ENST00000515300 253 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNORA19.3-201ENST00000516165 130 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNORA48.10-201ENST00000516965 160 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms