Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AC090116.1-201ENST00000615679 446 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 Z99496.1-201ENST00000469424 1477 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.58□□□□□ -1.84
TNFRSF4P43489 AL356274.2-201ENST00000624379 3752 ntBASIC3.58□□□□□ -1.84
TNFRSF4P43489 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 SNORA38.1-201ENST00000364172 131 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU6-339P-201ENST00000384310 107 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU6-1300P-201ENST00000391046 108 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 HSFY4P-201ENST00000415994 1181 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 EI24P1-201ENST00000416584 867 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC092634.6-201ENST00000418558 192 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPF2P1-201ENST00000424137 906 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC005300.1-201ENST00000428401 373 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 CYCSP32-201ENST00000440548 321 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL591503.2-201ENST00000442314 1005 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 snoU109.3-201ENST00000459477 145 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPL5P24-201ENST00000463742 885 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC104164.3-201ENST00000467363 1258 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL136126.1-201ENST00000473603 402 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC017015.1-201ENST00000477387 286 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC069499.1-201ENST00000489433 509 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC093663.1-201ENST00000497190 394 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC093752.1-206ENST00000511823 336 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 MTCO1P30-201ENST00000515244 580 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 RPL21P12-201ENST00000559810 515 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL157700.1-201ENST00000561973 1432 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 SULT1C2P1-202ENST00000562418 459 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC106754.1-201ENST00000562632 1513 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL355812.1-201ENST00000603215 216 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 AC027449.1-201ENST00000608890 407 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 AL158196.1-201ENST00000616786 434 ntBASIC3.57□□□□□ -1.84
TNFRSF4P43489 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.57□□□□□ -1.84
TNFRSF4P43489 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TNFRSF4P43489 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 FRG1CP-201ENST00000358464 769 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RNU6-837P-201ENST00000391056 108 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 U3.39-201ENST00000408569 239 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RNA5SP56-201ENST00000410277 118 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RN7SKP53-201ENST00000411337 315 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL035410.1-201ENST00000427409 427 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 RPL31P54-201ENST00000429803 370 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 GTF2IP3-201ENST00000433887 494 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MRPS18BP2-201ENST00000434310 759 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 FGF7P3-201ENST00000454645 303 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 OR5H5P-201ENST00000503164 928 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC109458.1-201ENST00000508858 316 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC005921.1-201ENST00000510589 286 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTCYBP37-201ENST00000510642 1133 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 MTCO3P44-201ENST00000510977 541 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 HNRNPKP5-201ENST00000515300 253 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNORA19.3-201ENST00000516165 130 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNORA48.10-201ENST00000516965 160 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms