Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CUX1P39880 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC4.09□□□□□ -1.75
CUX1P39880 RPL9P6-201ENST00000492764 598 ntBASIC4.09□□□□□ -1.75
CUX1P39880 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.09□□□□□ -1.75
CUX1P39880 RNA5SP458-201ENST00000516188 119 ntBASIC4.09□□□□□ -1.75
CUX1P39880 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.09□□□□□ -1.75
CUX1P39880 AC123904.3-201ENST00000547218 814 ntBASIC4.09□□□□□ -1.75
CUX1P39880 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CUX1P39880 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC4.09□□□□□ -1.75
CUX1P39880 AC092628.2-201ENST00000622492 339 ntBASIC4.09□□□□□ -1.75
CUX1P39880 FRG1DP-201ENST00000635586 771 ntBASIC4.09□□□□□ -1.75
CUX1P39880 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CUX1P39880 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CUX1P39880 AC026523.2-201ENST00000625039 7739 ntBASIC4.08□□□□□ -1.76
CUX1P39880 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CUX1P39880 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CUX1P39880 RNA5SP210-201ENST00000391034 120 ntBASIC4.08□□□□□ -1.76
CUX1P39880 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.08□□□□□ -1.76
CUX1P39880 AL662791.1-201ENST00000441992 928 ntBASIC4.08□□□□□ -1.76
CUX1P39880 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.08□□□□□ -1.76
CUX1P39880 AP001086.1-201ENST00000494882 321 ntBASIC4.08□□□□□ -1.76
CUX1P39880 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CUX1P39880 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.08□□□□□ -1.76
CUX1P39880 AL358913.1-201ENST00000554342 121 ntBASIC4.08□□□□□ -1.76
CUX1P39880 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.08□□□□□ -1.76
CUX1P39880 AC004696.1-201ENST00000614345 607 ntBASIC4.08□□□□□ -1.76
CUX1P39880 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CUX1P39880 MAPK10-322ENST00000641485 4530 ntBASIC4.08□□□□□ -1.76
CUX1P39880 RPL23AP74-201ENST00000437246 471 ntBASIC4.07□□□□□ -1.76
CUX1P39880 SUMO2P4-201ENST00000504193 276 ntBASIC4.07□□□□□ -1.76
CUX1P39880 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CUX1P39880 AC091515.1-201ENST00000548110 679 ntBASIC4.07□□□□□ -1.76
CUX1P39880 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.07□□□□□ -1.76
CUX1P39880 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CUX1P39880 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.07□□□□□ -1.76
CUX1P39880 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CUX1P39880 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC4.07□□□□□ -1.76
CUX1P39880 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.06□□□□□ -1.76
CUX1P39880 AL034379.1-201ENST00000423216 253 ntBASIC4.06□□□□□ -1.76
CUX1P39880 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.06□□□□□ -1.76
CUX1P39880 AC126182.1-201ENST00000478134 357 ntBASIC4.06□□□□□ -1.76
CUX1P39880 RPS26P24-201ENST00000497656 331 ntBASIC4.06□□□□□ -1.76
CUX1P39880 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.06□□□□□ -1.76
CUX1P39880 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CUX1P39880 AL162233.1-201ENST00000620014 944 ntBASIC4.06□□□□□ -1.76
CUX1P39880 PISRT1-201ENST00000626175 531 ntBASIC4.06□□□□□ -1.76
CUX1P39880 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CUX1P39880 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CUX1P39880 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CUX1P39880 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CUX1P39880 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CUX1P39880 RPS15AP6-201ENST00000420703 385 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AL356806.1-201ENST00000422524 916 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.05□□□□□ -1.76
CUX1P39880 AC018634.1-201ENST00000437554 401 ntBASIC4.05□□□□□ -1.76
CUX1P39880 RN7SL297P-201ENST00000483161 293 ntBASIC4.05□□□□□ -1.76
CUX1P39880 ACTR6P1-201ENST00000514311 1104 ntBASIC4.05□□□□□ -1.76
CUX1P39880 RNA5SP380-201ENST00000517190 98 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AP001207.1-201ENST00000524051 481 ntBASIC4.05□□□□□ -1.76
CUX1P39880 BNIP3P8-201ENST00000597863 560 ntBASIC4.05□□□□□ -1.76
CUX1P39880 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.05□□□□□ -1.76
CUX1P39880 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.05□□□□□ -1.76
CUX1P39880 RN7SKP140-201ENST00000411196 284 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.05□□□□□ -1.76
CUX1P39880 VN1R17P-201ENST00000472048 1090 ntBASIC4.05□□□□□ -1.76
CUX1P39880 RPS27AP9-201ENST00000477681 438 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AC103975.1-201ENST00000482506 483 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.05□□□□□ -1.76
CUX1P39880 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.05□□□□□ -1.76
CUX1P39880 AP001317.1-201ENST00000531194 960 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AC021269.2-201ENST00000532318 330 ntBASIC4.05□□□□□ -1.76
CUX1P39880 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.05□□□□□ -1.76
CUX1P39880 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.04□□□□□ -1.76
CUX1P39880 XPOTP1-201ENST00000443317 2398 ntBASIC4.04□□□□□ -1.76
CUX1P39880 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CUX1P39880 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CUX1P39880 RPS20P25-201ENST00000412447 352 ntBASIC4.04□□□□□ -1.76
CUX1P39880 AL450263.2-201ENST00000439400 589 ntBASIC4.04□□□□□ -1.76
CUX1P39880 OR11H5P-201ENST00000554039 926 ntBASIC4.04□□□□□ -1.76
CUX1P39880 AC010680.4-201ENST00000605334 543 ntBASIC4.04□□□□□ -1.76
CUX1P39880 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.04□□□□□ -1.76
CUX1P39880 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CUX1P39880 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CUX1P39880 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
CUX1P39880 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC4.03□□□□□ -1.76
CUX1P39880 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.03□□□□□ -1.76
CUX1P39880 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CUX1P39880 AL139286.1-201ENST00000604465 483 ntBASIC4.03□□□□□ -1.76
CUX1P39880 AC026634.1-201ENST00000634369 198 ntBASIC4.03□□□□□ -1.76
CUX1P39880 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
CUX1P39880 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.02□□□□□ -1.77
CUX1P39880 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
CUX1P39880 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CUX1P39880 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CUX1P39880 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.02□□□□□ -1.77
CUX1P39880 EIF5P1-201ENST00000400019 1231 ntBASIC4.02□□□□□ -1.77
CUX1P39880 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.02□□□□□ -1.77
CUX1P39880 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.02□□□□□ -1.77
CUX1P39880 AC026436.1-201ENST00000510537 270 ntBASIC4.02□□□□□ -1.77
CUX1P39880 PDCL2P2-201ENST00000533651 189 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms