Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP000676.4-201ENST00000624659 623 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC9P31274 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXC9P31274 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXC9P31274 AL513302.2-201ENST00000562313 1842 ntBASIC4.42□□□□□ -1.7
HOXC9P31274 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC9P31274 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXC9P31274 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 RNU6-707P-201ENST00000364647 95 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 OR51A3P-201ENST00000413596 924 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 PRELID3BP11-201ENST00000414230 479 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 MTCO1P3-201ENST00000429327 192 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 RPS4XP2-201ENST00000458402 793 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AP000942.1-201ENST00000463969 747 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 AC114322.1-201ENST00000506771 926 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 AC109471.1-201ENST00000511631 612 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 RPL7L1P13-201ENST00000511702 739 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC9P31274 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXC9P31274 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 AL360157.1-201ENST00000565962 87 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXC9P31274 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXC9P31274 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 AL162274.2-201ENST00000614406 332 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AC138932.5-201ENST00000617759 563 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AC009237.17-201ENST00000618111 748 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 AL356321.1-201ENST00000621360 228 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 MIR4727-201ENST00000622232 55 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 MFSD8-245ENST00000641743 948 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 CR381670.1-201ENST00000624291 1693 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC9P31274 DCAF13P3-201ENST00000561147 1334 ntBASIC4.41□□□□□ -1.7
HOXC9P31274 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC9P31274 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
HOXC9P31274 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HOXC9P31274 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXC9P31274 AC022031.1-201ENST00000585985 2593 ntBASIC4.4□□□□□ -1.7
HOXC9P31274 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.4□□□□□ -1.7
HOXC9P31274 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.4□□□□□ -1.7
HOXC9P31274 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXC9P31274 AC016716.1-201ENST00000265882 708 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 NACA3P-201ENST00000359690 648 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 snoZ40.1-201ENST00000364540 72 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC9P31274 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HOXC9P31274 SNORA40.2-201ENST00000390847 128 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC093698.1-201ENST00000423843 571 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXC9P31274 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 HMGB1P16-201ENST00000447155 540 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 Z73417.1-201ENST00000447373 778 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 AC239809.1-201ENST00000450470 217 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 USP9YP25-201ENST00000457708 443 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC010307.1-201ENST00000467206 836 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 TMED11P-201ENST00000479478 690 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 GAPDHP39-201ENST00000481866 979 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 DYNLL1P6-201ENST00000503440 264 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 AC091951.3-201ENST00000504093 246 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 AC113347.3-201ENST00000509113 148 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 SNORA70.19-201ENST00000516717 90 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 HMGB1P19-201ENST00000517578 577 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC9P31274 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC9P31274 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXC9P31274 PDCD5P1-201ENST00000543528 309 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AL121603.1-201ENST00000553815 142 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AL121576.1-201ENST00000556055 276 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 MTND4P33-201ENST00000556706 766 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC099489.2-201ENST00000574976 260 ntBASIC4.4□□□□□ -1.71
HOXC9P31274 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXC9P31274 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXC9P31274 AL451007.1-201ENST00000595491 289 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms