Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SNRPGP1-201ENST00000553864 222 ntBASIC2.94□□□□□ -1.94
USF1P22415 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.94□□□□□ -1.94
USF1P22415 AC023824.3-201ENST00000569003 562 ntBASIC2.94□□□□□ -1.94
USF1P22415 AC012182.1-201ENST00000570133 895 ntBASIC2.94□□□□□ -1.94
USF1P22415 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.94□□□□□ -1.94
USF1P22415 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.94□□□□□ -1.94
USF1P22415 AL365503.1-201ENST00000605247 905 ntBASIC2.94□□□□□ -1.94
USF1P22415 HSPE1P14-201ENST00000605812 302 ntBASIC2.94□□□□□ -1.94
USF1P22415 AP004247.3-201ENST00000608682 624 ntBASIC2.94□□□□□ -1.94
USF1P22415 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.94□□□□□ -1.94
USF1P22415 AL445493.3-201ENST00000619568 477 ntBASIC2.94□□□□□ -1.94
USF1P22415 AC020923.1-201ENST00000624021 917 ntBASIC2.94□□□□□ -1.94
USF1P22415 AC092184.1-201ENST00000625042 715 ntBASIC2.94□□□□□ -1.94
USF1P22415 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
USF1P22415 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
USF1P22415 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
USF1P22415 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 MTND5P31-201ENST00000419366 1374 ntBASIC2.93□□□□□ -1.94
USF1P22415 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USF1P22415 MIR16-2-201ENST00000362117 81 ntBASIC2.93□□□□□ -1.94
USF1P22415 Y_RNA.111-201ENST00000363248 100 ntBASIC2.93□□□□□ -1.94
USF1P22415 OR6K3-202ENST00000368146 996 ntBASIC2.93□□□□□ -1.94
USF1P22415 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USF1P22415 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 RNU6-1181P-201ENST00000384191 106 ntBASIC2.93□□□□□ -1.94
USF1P22415 SNORD17-201ENST00000390930 237 ntBASIC2.93□□□□□ -1.94
USF1P22415 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL445183.3-201ENST00000414168 502 ntBASIC2.93□□□□□ -1.94
USF1P22415 AC017079.2-201ENST00000416102 485 ntBASIC2.93□□□□□ -1.94
USF1P22415 OR4K6P-201ENST00000416478 897 ntBASIC2.93□□□□□ -1.94
USF1P22415 DBIP2-201ENST00000419076 262 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL606495.1-201ENST00000422100 813 ntBASIC2.93□□□□□ -1.94
USF1P22415 OSTCP5-201ENST00000425293 453 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.93□□□□□ -1.94
USF1P22415 AC002542.1-201ENST00000440683 193 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL662791.1-201ENST00000441992 928 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL034418.1-201ENST00000448675 860 ntBASIC2.93□□□□□ -1.94
USF1P22415 AC089999.1-201ENST00000460336 374 ntBASIC2.93□□□□□ -1.94
USF1P22415 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.93□□□□□ -1.94
USF1P22415 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 AC025768.1-201ENST00000510057 267 ntBASIC2.93□□□□□ -1.94
USF1P22415 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.93□□□□□ -1.94
USF1P22415 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 RNU6-416P-201ENST00000516265 103 ntBASIC2.93□□□□□ -1.94
USF1P22415 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.93□□□□□ -1.94
USF1P22415 OR5AP1P-201ENST00000529730 940 ntBASIC2.93□□□□□ -1.94
USF1P22415 AL139174.1-201ENST00000531489 886 ntBASIC2.93□□□□□ -1.94
USF1P22415 AP003385.6-201ENST00000531603 374 ntBASIC2.93□□□□□ -1.94
USF1P22415 AC109635.4-202ENST00000531666 412 ntBASIC2.93□□□□□ -1.94
USF1P22415 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USF1P22415 OR4T1P-201ENST00000554933 911 ntBASIC2.93□□□□□ -1.94
USF1P22415 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.93□□□□□ -1.94
USF1P22415 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC2.93□□□□□ -1.94
USF1P22415 MIR4738-201ENST00000579134 87 ntBASIC2.93□□□□□ -1.94
USF1P22415 ACTR3BP1-201ENST00000605584 1247 ntBASIC2.93□□□□□ -1.94
USF1P22415 RMST_8.1-201ENST00000610287 165 ntBASIC2.93□□□□□ -1.94
USF1P22415 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.93□□□□□ -1.94
USF1P22415 AC118273.1-201ENST00000525324 3006 ntBASIC2.93□□□□□ -1.94
USF1P22415 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USF1P22415 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USF1P22415 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.93□□□□□ -1.94
USF1P22415 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.92□□□□□ -1.94
USF1P22415 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
USF1P22415 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.92□□□□□ -1.94
USF1P22415 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 RNA5SP235-201ENST00000365411 114 ntBASIC2.92□□□□□ -1.94
USF1P22415 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 RNU6-629P-201ENST00000384061 103 ntBASIC2.92□□□□□ -1.94
USF1P22415 SNORA48.2-201ENST00000390926 124 ntBASIC2.92□□□□□ -1.94
USF1P22415 AP000567.1-201ENST00000406413 156 ntBASIC2.92□□□□□ -1.94
USF1P22415 RNA5SP56-201ENST00000410277 118 ntBASIC2.92□□□□□ -1.94
USF1P22415 RPL31P12-201ENST00000422587 358 ntBASIC2.92□□□□□ -1.94
USF1P22415 AC233981.1-201ENST00000423224 461 ntBASIC2.92□□□□□ -1.94
USF1P22415 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 RPL21P66-201ENST00000426566 466 ntBASIC2.92□□□□□ -1.94
USF1P22415 AC005300.1-201ENST00000428401 373 ntBASIC2.92□□□□□ -1.94
USF1P22415 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.92□□□□□ -1.94
USF1P22415 GTF2IP12-201ENST00000456547 356 ntBASIC2.92□□□□□ -1.94
USF1P22415 HMGN2P16-201ENST00000456802 261 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms