Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC084824.4-201ENST00000620106 731 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 AP000770.2-201ENST00000623694 100 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 AC090617.9-201ENST00000623751 147 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 SNORA50A-202ENST00000629536 136 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 FRG1DP-201ENST00000635586 771 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 MIR4496-201ENST00000635896 61 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 AC138649.5-201ENST00000637456 137 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC4P09017 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC4P09017 NSRP1P1-201ENST00000444067 1693 ntBASIC3.26□□□□□ -1.89
HOXC4P09017 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC4P09017 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC4P09017 AC106754.1-201ENST00000562632 1513 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC011978.2-201ENST00000569835 2054 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC4P09017 RNU6-1257P-201ENST00000384625 110 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 MIR483-201ENST00000385070 76 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AL158050.1-201ENST00000416077 457 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC4P09017 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC013262.1-201ENST00000426710 252 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 RPL23AP82-202ENST00000427528 469 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 MTCYBP15-201ENST00000433123 1127 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXC4P09017 snoU13.24-201ENST00000458998 104 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 RPL5P24-201ENST00000463742 885 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 CENPBD1P1-201ENST00000464061 469 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC017015.1-201ENST00000477387 286 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC078817.1-201ENST00000492623 435 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC121161.1-201ENST00000510606 652 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC023141.12-201ENST00000512399 199 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 SNORA74D-201ENST00000516404 141 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 IGHV3-76-201ENST00000522465 295 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC010306.1-201ENST00000523223 1117 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 OR8L1P-201ENST00000534005 955 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 RPL21P12-201ENST00000559810 515 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 ZNF415P1-201ENST00000582279 1166 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC090312.2-201ENST00000582687 378 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 uc_338.1-201ENST00000612113 180 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC018816.2-201ENST00000621460 353 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC4P09017 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC4P09017 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXC4P09017 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC4P09017 MTND5P3-201ENST00000438536 1800 ntBASIC3.25□□□□□ -1.89
HOXC4P09017 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXC4P09017 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXC4P09017 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC4P09017 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
HOXC4P09017 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXC4P09017 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXC4P09017 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 MIR16-2-201ENST00000362117 81 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 RPL22P22-201ENST00000395439 379 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 AL357075.1-201ENST00000404107 726 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 RNU2-21P-201ENST00000410368 188 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 RPS15AP40-201ENST00000419621 391 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 FO393414.1-201ENST00000428697 1184 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AL353705.1-201ENST00000433468 480 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC091862.1-201ENST00000438016 1100 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC069540.1-201ENST00000446320 988 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC4P09017 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC092451.1-201ENST00000480211 153 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXC4P09017 DSTNP2-201ENST00000504533 515 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC4P09017 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXC4P09017 RNU5A-7P-201ENST00000515979 116 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 RNU4-60P-201ENST00000517239 135 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 AC026407.1-201ENST00000518369 204 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 MTND2P32-201ENST00000521584 1038 ntBASIC3.24□□□□□ -1.89
HOXC4P09017 OR5AK3P-201ENST00000527486 1297 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 158.4 ms