Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC135178.6-201ENST00000605314 398 ntBASIC2.61□□□□□ -1.99
CPSF4O95639 AC002076.2-201ENST00000617362 122 ntBASIC2.61□□□□□ -1.99
CPSF4O95639 AC138649.5-201ENST00000637456 137 ntBASIC2.61□□□□□ -1.99
CPSF4O95639 MTND4P31-201ENST00000425607 1343 ntBASIC2.61□□□□□ -1.99
CPSF4O95639 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CPSF4O95639 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
CPSF4O95639 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CPSF4O95639 AC138915.3-201ENST00000562908 1389 ntBASIC2.61□□□□□ -1.99
CPSF4O95639 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CPSF4O95639 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 RNA5SP167-201ENST00000365461 116 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 HMGB1P13-201ENST00000406019 642 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 RNU2-17P-201ENST00000410290 190 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 RN7SKP27-201ENST00000410684 333 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 PRELID3BP11-201ENST00000414230 479 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF4O95639 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 RPL7P29-201ENST00000437151 728 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AL138799.3-201ENST00000438968 350 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 MTCO3P43-201ENST00000440974 771 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC007000.2-201ENST00000442564 487 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC112653.1-201ENST00000443851 386 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC097499.1-201ENST00000444277 208 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF4O95639 RPS20P32-201ENST00000456044 356 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AP001992.1-205ENST00000462248 379 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 RPS29P26-201ENST00000477483 171 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC092451.1-201ENST00000480211 153 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC111193.1-201ENST00000504097 155 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 SNX5P1-201ENST00000505757 1041 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.6□□□□□ -1.99
CPSF4O95639 AC010374.2-201ENST00000512933 535 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC010265.1-201ENST00000513509 211 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 GMPSP1-201ENST00000514075 579 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC103833.1-201ENST00000517442 172 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF4O95639 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF4O95639 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.6□□□□□ -1.99
CPSF4O95639 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF4O95639 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.6□□□□□ -1.99
CPSF4O95639 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF4O95639 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF4O95639 PCNAP1-202ENST00000595299 752 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC024153.1-201ENST00000603103 365 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC069304.3-201ENST00000603938 1084 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC2.6□□□□□ -1.99
CPSF4O95639 AP003117.2-201ENST00000606010 545 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AL450270.1-201ENST00000606160 391 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC011374.2-201ENST00000607135 526 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF4O95639 AL079305.1-201ENST00000623159 3008 ntBASIC2.6□□□□□ -1.99
CPSF4O95639 AC091152.2-201ENST00000591628 2569 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CPSF4O95639 AP003122.5-201ENST00000527668 3766 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AP001148.1-201ENST00000624124 2359 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.59□□□□□ -1.99
CPSF4O95639 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CPSF4O95639 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CPSF4O95639 RNU6-252P-201ENST00000363232 107 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.59□□□□□ -1.99
CPSF4O95639 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.59□□□□□ -1.99
CPSF4O95639 MIR23B-201ENST00000384832 97 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 HMGB1P10-201ENST00000395823 563 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC234782.4-201ENST00000417646 1048 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 MORF4L1P7-201ENST00000426038 703 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AL031736.2-201ENST00000426573 787 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC008065.1-201ENST00000428525 348 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 ELOCP6-201ENST00000429066 328 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.59□□□□□ -1.99
CPSF4O95639 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 RPL23AP74-201ENST00000437246 471 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AL513321.1-201ENST00000441175 761 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 ARL5AP2-201ENST00000444698 533 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 GSTA11P-201ENST00000452866 669 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.59□□□□□ -1.99
CPSF4O95639 ELOCP12-201ENST00000458706 328 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC108729.2-201ENST00000476543 840 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 MTATP6P22-201ENST00000507369 598 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 AC022080.3-201ENST00000544433 482 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 AL731537.2-201ENST00000561565 951 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC233266.2-201ENST00000567067 528 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC053481.3-201ENST00000577881 843 ntBASIC2.59□□□□□ -1.99
CPSF4O95639 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.59□□□□□ -1.99
CPSF4O95639 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF4O95639 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC2.59□□□□□ -1.99
CPSF4O95639 AC024220.1-201ENST00000603675 484 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms