Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC021269.2-201ENST00000532318 330 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 RFPL1S-203ENST00000539579 330 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC068313.1-201ENST00000604028 1008 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC074140.1-201ENST00000621617 208 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 SETP10-201ENST00000424368 814 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 EXTL2P1-201ENST00000446218 416 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC147055.1-201ENST00000509261 750 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 MIR5092-201ENST00000583139 88 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AL450489.1-201ENST00000612071 468 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC022031.1-201ENST00000585985 2593 ntBASIC4.17□□□□□ -1.74
CCDC88BA6NC98 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC88BA6NC98 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.17□□□□□ -1.74
CCDC88BA6NC98 MIR3186-201ENST00000577404 85 ntBASIC4.17□□□□□ -1.74
CCDC88BA6NC98 AC131238.1-201ENST00000617135 328 ntBASIC4.17□□□□□ -1.74
CCDC88BA6NC98 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.17□□□□□ -1.74
CCDC88BA6NC98 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC88BA6NC98 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC88BA6NC98 AC004925.1-201ENST00000624256 2706 ntBASIC4.17□□□□□ -1.74
CCDC88BA6NC98 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC88BA6NC98 MAPK10-322ENST00000641485 4530 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AC090229.1-201ENST00000590983 1609 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 VN1R17P-201ENST00000472048 1090 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 ACTR6P1-201ENST00000514311 1104 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AP000867.2-201ENST00000532468 320 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AC061975.8-201ENST00000587058 721 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 AC025754.2-201ENST00000606491 432 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 NF1P10-201ENST00000613227 742 ntBASIC4.16□□□□□ -1.74
CCDC88BA6NC98 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC88BA6NC98 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AL158825.1-201ENST00000414735 521 ntBASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AL606490.7-201ENST00000433136 191 ntBASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AP001317.1-201ENST00000531194 960 ntBASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 AC099063.3-201ENST00000642066 185 ntBASIC4.15□□□□□ -1.75
CCDC88BA6NC98 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC88BA6NC98 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 ST13P20-201ENST00000447996 1065 ntBASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AGGF1P8-201ENST00000562979 1000 ntBASIC4.14□□□□□ -1.75
CCDC88BA6NC98 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88BA6NC98 MIR137-201ENST00000385223 102 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 RNA5SP129-201ENST00000410276 118 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC88BA6NC98 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC88BA6NC98 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC88BA6NC98 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC88BA6NC98 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC88BA6NC98 DEFB122-202ENST00000569013 197 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 AC009977.1-201ENST00000586015 570 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 AL137072.1-201ENST00000603444 466 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.13□□□□□ -1.75
CCDC88BA6NC98 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC104058.1-201ENST00000448028 297 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AL354710.1-201ENST00000453641 246 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 RPL23AP49-201ENST00000492925 468 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 USP9YP5-201ENST00000511770 630 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AL162233.1-201ENST00000620014 944 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC103798.2-201ENST00000624292 632 ntBASIC4.12□□□□□ -1.75
CCDC88BA6NC98 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88BA6NC98 AL162578.1-201ENST00000406202 378 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 OR7K1P-201ENST00000546439 926 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 MIR5007-201ENST00000583098 95 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 AC067747.1-201ENST00000608026 250 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 PISRT1-201ENST00000626175 531 ntBASIC4.11□□□□□ -1.75
CCDC88BA6NC98 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CCDC88BA6NC98 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms