Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR6730-201ENST00000622213 67 ntBASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIMD1Q9UGP4 AC091812.1-201ENST00000432235 1948 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RNU1-49P-201ENST00000363468 159 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 Y_RNA.288-201ENST00000364854 92 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RNU6-701P-201ENST00000384059 107 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RNU6-190P-201ENST00000384154 102 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 CYB5AP4-201ENST00000396692 399 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 OR3A2-201ENST00000408891 1076 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 UBE2V1P4-201ENST00000425374 344 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 USP9YP30-201ENST00000430729 455 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AL445928.1-201ENST00000435545 222 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 NOTCH2P1-201ENST00000443481 624 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AL163193.1-201ENST00000444895 788 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 BX276092.4-201ENST00000452056 248 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC002553.2-201ENST00000453217 340 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RN7SL515P-201ENST00000463999 297 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RPL21P103-201ENST00000479921 488 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC090686.1-201ENST00000481577 749 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RNU6-408P-201ENST00000515910 100 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC012400.1-201ENST00000518452 381 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC026470.2-201ENST00000561492 181 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC020916.2-201ENST00000591242 360 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 AC109780.1-201ENST00000451768 1344 ntBASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.44□□□□□ -1.38
LIMD1Q9UGP4 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC022164.1-201ENST00000568767 2673 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MIR105-2-201ENST00000385083 81 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MT-TC-201ENST00000387405 66 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNU6-821P-201ENST00000390995 107 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 MIR937-201ENST00000401271 86 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 OR6E1P-201ENST00000414424 923 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RPL35AP31-201ENST00000418340 337 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC097713.2-201ENST00000430199 356 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AL161722.2-201ENST00000434731 981 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 RHOT1P3-201ENST00000436571 331 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC096775.1-201ENST00000437724 448 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 FTLP8-201ENST00000446770 267 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 PCNPP5-201ENST00000452246 481 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 AL445687.2-201ENST00000458156 728 ntBASIC6.43□□□□□ -1.38
LIMD1Q9UGP4 CYCSP34-201ENST00000458172 304 ntBASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms