Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.46□□□□□ -1.86
SSX3Q99909 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
SSX3Q99909 AC091152.2-201ENST00000591628 2569 ntBASIC3.46□□□□□ -1.86
SSX3Q99909 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SSX3Q99909 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 BDP1P-201ENST00000582658 1990 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
SSX3Q99909 NUP58P1-201ENST00000502546 1738 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 RNU1-14P-201ENST00000362759 152 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SSX3Q99909 Y_RNA.408-201ENST00000383987 102 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SSX3Q99909 AL583835.1-201ENST00000399570 407 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 RNA5SP80-201ENST00000410475 111 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 RN7SKP235-201ENST00000410662 305 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 AC092447.6-201ENST00000414578 210 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 MTND2P5-201ENST00000432656 1006 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.45□□□□□ -1.86
SSX3Q99909 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.45□□□□□ -1.86
SSX3Q99909 AC092427.1-201ENST00000439177 601 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 TPTE2P3-201ENST00000441562 1189 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 VN1R25P-201ENST00000443385 738 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 MTCYBP11-201ENST00000447254 1109 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 RPL23AP81-201ENST00000455252 467 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 RPL7P19-201ENST00000469948 618 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC006517.1-201ENST00000480485 328 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC069499.1-201ENST00000489433 509 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 SETP14-201ENST00000497538 873 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 RNA5SP519-201ENST00000516480 119 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 MIR2116-201ENST00000517221 80 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 AP001636.2-201ENST00000525517 696 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL139174.1-201ENST00000531489 886 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 HIGD1AP17-201ENST00000554576 276 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC007224.1-201ENST00000564410 144 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.45□□□□□ -1.86
SSX3Q99909 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.45□□□□□ -1.86
SSX3Q99909 LARP7P2-201ENST00000575306 125 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.45□□□□□ -1.86
SSX3Q99909 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.45□□□□□ -1.86
SSX3Q99909 AC012669.1-201ENST00000603209 283 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL163642.2-201ENST00000604722 1019 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.45□□□□□ -1.86
SSX3Q99909 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.45□□□□□ -1.86
SSX3Q99909 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 AL590240.3-201ENST00000621416 943 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC068787.1-201ENST00000623908 691 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AC068724.3-201ENST00000625906 87 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.45□□□□□ -1.86
SSX3Q99909 AC090897.3-201ENST00000636973 1157 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 AC116096.1-201ENST00000566804 2314 ntBASIC3.45□□□□□ -1.86
SSX3Q99909 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
SSX3Q99909 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SSX3Q99909 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
SSX3Q99909 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
SSX3Q99909 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SSX3Q99909 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SSX3Q99909 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.44□□□□□ -1.86
SSX3Q99909 LARP1BP1-201ENST00000506036 1359 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
SSX3Q99909 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SSX3Q99909 SNRPEP3-201ENST00000338402 276 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 RNU4-92P-201ENST00000363783 136 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 SNORD116.1-201ENST00000365628 92 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SSX3Q99909 Y_RNA.465-201ENST00000384293 102 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
SSX3Q99909 AL356967.1-201ENST00000406305 431 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 AL450338.1-201ENST00000407987 512 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 RN7SKP182-201ENST00000410772 298 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 MIR1911-201ENST00000410783 80 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.44□□□□□ -1.86
SSX3Q99909 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.44□□□□□ -1.86
SSX3Q99909 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.44□□□□□ -1.86
SSX3Q99909 COX6B1P7-201ENST00000430845 235 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 RPEP2-201ENST00000432149 701 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 AL050321.1-201ENST00000432363 400 ntBASIC3.44□□□□□ -1.86
SSX3Q99909 AL035246.1-201ENST00000433554 1255 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms