Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
VPS35Q96QK1 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
VPS35Q96QK1 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS35Q96QK1 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS35Q96QK1 GABPAP-201ENST00000419271 1356 ntBASIC3.51□□□□□ -1.85
VPS35Q96QK1 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS35Q96QK1 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS35Q96QK1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 RNU6-582P-201ENST00000362989 107 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 SNORD116-23-201ENST00000384645 92 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 RNA5SP56-201ENST00000410277 118 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 RN7SKP111-201ENST00000410349 271 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 RPS29P4-201ENST00000414733 161 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 TOMM22P1-201ENST00000418578 312 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 DBIP2-201ENST00000419076 262 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AP002884.2-201ENST00000471647 395 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC084357.1-201ENST00000473404 255 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 RPL31P13-201ENST00000484151 370 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 OR5H5P-201ENST00000503164 928 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC087894.1-201ENST00000538359 518 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC023825.1-201ENST00000566704 1030 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 MIR1254-2-201ENST00000579553 63 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 MIR4444-1-201ENST00000581696 74 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 MIR4444-2-201ENST00000584390 74 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL669831.4-202ENST00000590817 238 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC011816.2-201ENST00000607089 556 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AP000238.1-201ENST00000608759 426 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC005156.1-201ENST00000613371 573 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC090116.1-201ENST00000615679 446 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC112200.1-201ENST00000625015 234 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS35Q96QK1 SNORA50A-202ENST00000629536 136 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 AC244258.1-201ENST00000637553 1071 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 OR8B1P-202ENST00000641132 1178 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 AL356274.2-201ENST00000624379 3752 ntBASIC3.5□□□□□ -1.85
VPS35Q96QK1 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
VPS35Q96QK1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS35Q96QK1 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS35Q96QK1 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS35Q96QK1 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS35Q96QK1 RNU6-600P-201ENST00000362524 99 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 RNU6-839P-201ENST00000363347 108 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 MIR218-2-201ENST00000385006 110 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 SNORA48.7-201ENST00000391302 135 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 SNORA11-201ENST00000408789 128 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC027644.1-201ENST00000419595 298 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC013262.1-201ENST00000426710 252 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 ATP5JP1-201ENST00000431631 322 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 SETP5-201ENST00000437270 562 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 HMGN1P5-201ENST00000448591 263 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AL136126.1-201ENST00000473603 402 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 GAPDHP39-201ENST00000481866 979 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 RPL23AP55-201ENST00000498163 452 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC110768.1-201ENST00000509222 400 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AP004371.1-201ENST00000525240 214 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AP003066.2-201ENST00000529375 555 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 OR5B10P-201ENST00000532869 642 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 LSM6P2-201ENST00000552208 177 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 ZNF192P1-203ENST00000565888 810 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 MIR4666A-201ENST00000580160 79 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC090330.1-201ENST00000588646 764 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC011492.1-201ENST00000600023 315 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC099785.1-201ENST00000605697 437 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 U3.45-201ENST00000607547 219 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC092354.2-201ENST00000607786 514 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS35Q96QK1 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms