Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL121594.5-201ENST00000631724 573 ntBASIC3.5□□□□□ -1.85
ZNF540Q8NDQ6 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 PWAR6-201ENST00000552334 4618 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 MIR372-201ENST00000362225 67 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-582P-201ENST00000362989 107 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RNU5D-1-201ENST00000363299 116 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 U6.112-201ENST00000384129 70 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 SNORA51.6-201ENST00000384151 125 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 U3.29-201ENST00000391296 212 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RNU6ATAC-201ENST00000408749 126 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 HSPE1P12-201ENST00000412576 301 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 FCF1P2-201ENST00000415284 583 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 TAF13P2-201ENST00000416876 286 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 SFR1P2-201ENST00000421841 730 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 SDCBPP2-201ENST00000424643 885 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 UBE2V1P6-201ENST00000430840 422 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC007389.2-201ENST00000434630 306 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 SEPT14P24-201ENST00000447236 180 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RPL12P26-201ENST00000452430 487 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 SAP18P1-201ENST00000512058 390 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 OR4A12P-201ENST00000530847 918 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC008127.2-201ENST00000549925 1075 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 MTCYBP27-201ENST00000555160 670 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC093510.2-201ENST00000562820 896 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC034105.4-201ENST00000568304 277 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AL137849.1-201ENST00000604767 169 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC245389.1-201ENST00000605141 529 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC009570.1-201ENST00000609599 745 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 MIR6875-201ENST00000617506 72 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC026634.1-201ENST00000634369 198 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 AC090897.3-201ENST00000636973 1157 ntBASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
ZNF540Q8NDQ6 ZNF542P-204ENST00000482727 1305 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-839P-201ENST00000363347 108 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-353P-201ENST00000364266 108 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 OR6K3-202ENST00000368146 996 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 SNORA1.3-201ENST00000384676 136 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 HIGD1AP12-201ENST00000427832 281 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC012497.1-201ENST00000429392 575 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC084198.1-201ENST00000477747 402 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 VN1R105P-201ENST00000486595 910 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC111000.2-201ENST00000507775 550 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC026784.1-201ENST00000507986 352 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC006390.1-201ENST00000508068 283 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC093331.1-201ENST00000521474 169 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC008489.1-201ENST00000524271 483 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 UBE2NP1-201ENST00000545592 458 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC091516.1-201ENST00000549191 703 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC006130.2-201ENST00000586202 326 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AP001542.2-201ENST00000593141 364 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC124312.4-201ENST00000605533 310 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC092574.1-201ENST00000609771 420 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AL133445.2-201ENST00000611191 527 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC008121.2-201ENST00000614647 523 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AL356863.1-201ENST00000623378 1080 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AC093875.1-201ENST00000623688 504 ntBASIC3.48□□□□□ -1.85
ZNF540Q8NDQ6 AP003122.6-201ENST00000623831 495 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms