Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC022447.3-201ENST00000506865 495 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC093840.1-201ENST00000511599 336 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AF186190.1-201ENST00000517470 480 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC022878.1-201ENST00000530684 149 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AP003072.1-201ENST00000531740 145 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 TRAV15-201ENST00000556680 249 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC138915.2-201ENST00000569776 97 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC009977.1-201ENST00000586015 570 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 RNU6-88P-201ENST00000606801 100 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 YWHAEP7-203ENST00000622054 312 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC000374.1-201ENST00000434698 1745 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC138915.3-201ENST00000562908 1389 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AL672167.1-204ENST00000641875 3017 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP39Q53GS9 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 CCT8P1-201ENST00000413611 1657 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC025574.1-201ENST00000554784 1653 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 SUGT1P1-201ENST00000379514 476 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 MIR129-1-201ENST00000384972 72 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
USP39Q53GS9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 HMGB1P11-201ENST00000413899 637 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 TBCAP2-201ENST00000416175 326 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC004690.1-201ENST00000418216 328 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC013429.2-201ENST00000418798 781 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC114814.2-201ENST00000419195 485 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 SDCBPP1-201ENST00000440192 890 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 RAD23BP3-201ENST00000454157 1152 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 RPL18AP17-201ENST00000455326 198 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 PPIAP21-201ENST00000464473 501 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC007537.2-201ENST00000472093 511 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC023598.1-201ENST00000472521 361 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AL161747.1-201ENST00000480068 358 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC013356.1-201ENST00000489027 564 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 RPL39P36-201ENST00000490784 156 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC023424.1-201ENST00000496058 459 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 SCARNA22-201ENST00000503991 125 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 HMGB1P28-201ENST00000507778 552 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.87□□□□□ -1.63
USP39Q53GS9 Y_RNA.693-201ENST00000516641 110 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 RPL23AP53-201ENST00000521854 457 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 ARL2BPP5-201ENST00000523141 481 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 OR5M2P-201ENST00000529003 936 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC133555.2-201ENST00000550213 292 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC068446.3-201ENST00000555285 382 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC025678.1-201ENST00000567861 338 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 MIR4472-2-201ENST00000582069 67 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC022726.1-201ENST00000587475 207 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.87□□□□□ -1.63
USP39Q53GS9 AL161729.3-201ENST00000603533 673 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC115286.1-201ENST00000604298 434 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC112191.3-201ENST00000604371 277 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC007363.1-201ENST00000604736 620 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AC069304.2-201ENST00000605154 435 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 AL008729.2-201ENST00000606393 473 ntBASIC4.87□□□□□ -1.63
USP39Q53GS9 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.87□□□□□ -1.63
USP39Q53GS9 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USP39Q53GS9 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.87□□□□□ -1.63
USP39Q53GS9 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms