Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 RN7SKP244-201ENST00000516513 307 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AL356274.1-201ENST00000617064 410 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AC009039.2-201ENST00000624524 529 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AL592437.2-201ENST00000421655 2434 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-1320P-201ENST00000390838 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-1269P-201ENST00000391139 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC069218.2-201ENST00000411665 344 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 YPEL5P1-201ENST00000419731 367 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 FAM103A2P-201ENST00000444122 354 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 WASF1P1-201ENST00000447560 1131 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-599P-201ENST00000459383 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-1193P-201ENST00000459461 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 FAM172BP-201ENST00000487497 1089 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC147055.1-201ENST00000509261 750 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AL389895.1-201ENST00000554127 252 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-368P-201ENST00000620928 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-538P-201ENST00000622329 107 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC092079.1-201ENST00000558620 1985 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC010329.2-201ENST00000595195 2737 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC066616.2-201ENST00000559334 1481 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AIMP1P1-201ENST00000418670 937 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 PTP4A1P5-201ENST00000420305 455 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC244033.1-201ENST00000426826 870 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC243772.1-201ENST00000451620 410 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 IFNWP4-201ENST00000453148 294 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC114982.2-201ENST00000461396 358 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC098583.1-201ENST00000480875 255 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AP001646.1-201ENST00000527936 915 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 YWHAZP1-201ENST00000556286 722 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC105036.1-201ENST00000566222 271 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC090115.4-201ENST00000609970 188 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC067852.7-201ENST00000623270 535 ntBASIC3.28□□□□□ -1.88
CCDC88AQ3V6T2 AC092593.1-201ENST00000515413 1815 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 RNVU1-3-201ENST00000364313 161 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 RNA5SP239-201ENST00000410218 129 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 MTND4LP21-201ENST00000415303 295 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC008280.2-201ENST00000455473 307 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 HMGB1P25-201ENST00000468402 607 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 DYNLL1P6-201ENST00000503440 264 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 ATP5F1P5-201ENST00000526403 760 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC044913.1-201ENST00000557200 430 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC016252.1-201ENST00000609721 474 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 AC009452.1-201ENST00000640823 606 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 HSPA8P4-201ENST00000511877 1920 ntBASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88AQ3V6T2 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 SNORD62.1-201ENST00000362541 86 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 EI24P2-201ENST00000397776 1076 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 SEC63P1-201ENST00000425785 1258 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL356320.1-201ENST00000429616 163 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 FCF1P1-201ENST00000432690 571 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL353705.4-201ENST00000449661 238 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC092045.1-201ENST00000495716 1231 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC108210.2-201ENST00000503681 201 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 CBX3P5-201ENST00000552017 521 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC005046.1-201ENST00000608515 625 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL020991.1-201ENST00000612314 373 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC008264.2-201ENST00000610193 3731 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC022031.1-201ENST00000585985 2593 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 SNORA36C-201ENST00000384289 132 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 MIR27B-201ENST00000385129 97 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL390023.1-201ENST00000428836 262 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms