Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.57□□□□□ -1.84
SOX3P41225 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX3P41225 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.57□□□□□ -1.84
SOX3P41225 DPRXP5-201ENST00000604662 539 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 AC131235.4-201ENST00000609288 620 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AL450489.1-201ENST00000612071 468 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC069209.1-201ENST00000619282 651 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC000123.2-201ENST00000623124 461 ntBASIC3.57□□□□□ -1.84
SOX3P41225 CR381670.1-201ENST00000624291 1693 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC120349.3-201ENST00000624377 529 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC017037.3-201ENST00000625016 472 ntBASIC3.57□□□□□ -1.84
SOX3P41225 CDR1-202ENST00000625883 1485 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC116618.1-201ENST00000634617 774 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC244205.2-202ENST00000635781 342 ntBASIC3.57□□□□□ -1.84
SOX3P41225 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.57□□□□□ -1.84
SOX3P41225 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
SOX3P41225 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
SOX3P41225 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
SOX3P41225 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.56□□□□□ -1.84
SOX3P41225 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SOX3P41225 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 AC005539.1-201ENST00000443768 1479 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC104454.1-201ENST00000421341 1401 ntBASIC3.56□□□□□ -1.84
SOX3P41225 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 AL122126.1-201ENST00000546905 1318 ntBASIC3.56□□□□□ -1.84
SOX3P41225 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 Y_RNA.311-201ENST00000365068 96 ntBASIC3.56□□□□□ -1.84
SOX3P41225 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SOX3P41225 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AL049545.1-201ENST00000401856 572 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AL590704.1-201ENST00000402856 794 ntBASIC3.56□□□□□ -1.84
SOX3P41225 SNORA3.3-201ENST00000408712 125 ntBASIC3.56□□□□□ -1.84
SOX3P41225 RN7SKP27-201ENST00000410684 333 ntBASIC3.56□□□□□ -1.84
SOX3P41225 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.56□□□□□ -1.84
SOX3P41225 RPS15AP40-201ENST00000419621 391 ntBASIC3.56□□□□□ -1.84
SOX3P41225 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.56□□□□□ -1.84
SOX3P41225 RPL12P26-201ENST00000452430 487 ntBASIC3.56□□□□□ -1.84
SOX3P41225 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 MTCO3P16-201ENST00000454456 754 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC010301.1-201ENST00000473936 355 ntBASIC3.56□□□□□ -1.84
SOX3P41225 RPL7P18-201ENST00000478965 734 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.56□□□□□ -1.84
SOX3P41225 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.56□□□□□ -1.84
SOX3P41225 AC093853.1-201ENST00000515689 483 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AC022695.1-201ENST00000522089 237 ntBASIC3.56□□□□□ -1.84
SOX3P41225 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.56□□□□□ -1.84
SOX3P41225 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SOX3P41225 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.56□□□□□ -1.84
SOX3P41225 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.56□□□□□ -1.84
SOX3P41225 AC069304.2-201ENST00000605154 435 ntBASIC3.56□□□□□ -1.84
SOX3P41225 BRDTP1-201ENST00000605735 677 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AP001521.1-201ENST00000609150 300 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC005344.1-201ENST00000613391 459 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC068722.2-201ENST00000618734 544 ntBASIC3.56□□□□□ -1.84
SOX3P41225 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.56□□□□□ -1.84
SOX3P41225 AP003485.2-201ENST00000623636 610 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC034229.5-201ENST00000624258 185 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC079416.3-201ENST00000624479 549 ntBASIC3.56□□□□□ -1.84
SOX3P41225 AC120349.2-201ENST00000625002 298 ntBASIC3.56□□□□□ -1.84
SOX3P41225 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 AL139811.1-201ENST00000424779 2299 ntBASIC3.56□□□□□ -1.84
SOX3P41225 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
SOX3P41225 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.55□□□□□ -1.84
SOX3P41225 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.55□□□□□ -1.84
SOX3P41225 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SOX3P41225 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.55□□□□□ -1.84
SOX3P41225 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
SOX3P41225 AP004289.2-201ENST00000444413 1457 ntBASIC3.55□□□□□ -1.84
SOX3P41225 AP001486.2-201ENST00000561652 5113 ntBASIC3.55□□□□□ -1.84
SOX3P41225 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SOX3P41225 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SOX3P41225 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
SOX3P41225 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SOX3P41225 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SOX3P41225 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SOX3P41225 U1.1-201ENST00000384101 164 ntBASIC3.55□□□□□ -1.84
SOX3P41225 TAF9BP1-201ENST00000396646 746 ntBASIC3.55□□□□□ -1.84
SOX3P41225 AL450338.1-201ENST00000407987 512 ntBASIC3.55□□□□□ -1.84
SOX3P41225 RNU6ATAC-201ENST00000408749 126 ntBASIC3.55□□□□□ -1.84
SOX3P41225 RNU6-757P-201ENST00000410334 100 ntBASIC3.55□□□□□ -1.84
SOX3P41225 AC069218.2-201ENST00000411665 344 ntBASIC3.55□□□□□ -1.84
SOX3P41225 AL133384.1-201ENST00000412744 351 ntBASIC3.55□□□□□ -1.84
SOX3P41225 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.55□□□□□ -1.84
SOX3P41225 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.55□□□□□ -1.84
SOX3P41225 AC008065.1-201ENST00000428525 348 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms