Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 RNA5SP502-201ENST00000362694 119 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 SNORA75-201ENST00000384158 137 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 RNA5SP36-201ENST00000410197 133 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 Y_RNA.619-201ENST00000410951 90 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AL663109.1-201ENST00000411498 844 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 RPS3AP9-201ENST00000417027 792 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AL161631.1-201ENST00000417933 486 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 RPS15AP40-201ENST00000419621 391 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.92□□□□□ -1.62
SMARCA1P28370 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 USP9YP14-201ENST00000430663 563 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC091390.1-201ENST00000433904 331 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 MTND1P27-201ENST00000451117 902 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 RPL5P32-201ENST00000454085 879 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC087879.1-201ENST00000474343 374 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC108475.1-201ENST00000507880 950 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AC109458.1-201ENST00000508858 316 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 RNA5SP519-201ENST00000516480 119 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AL139174.1-201ENST00000531489 886 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.92□□□□□ -1.62
SMARCA1P28370 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.92□□□□□ -1.62
SMARCA1P28370 MIR4458-201ENST00000578872 75 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 ZNF415P1-201ENST00000582279 1166 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 IPO5P1-202ENST00000600039 287 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 MIR6758-201ENST00000620653 63 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 AL590240.3-201ENST00000621416 943 ntBASIC4.92□□□□□ -1.62
SMARCA1P28370 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
SMARCA1P28370 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SMARCA1P28370 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
SMARCA1P28370 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SMARCA1P28370 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.91□□□□□ -1.62
SMARCA1P28370 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 MTND5P29-201ENST00000458676 1807 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 SAGE4P-201ENST00000442271 3381 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 RPL32P3-201ENST00000359025 275 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 RNU6-1243P-201ENST00000364028 107 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AL121972.1-201ENST00000402023 252 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 LAP3P1-201ENST00000403648 294 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 BTBD10P2-201ENST00000404779 676 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 MIR1179-201ENST00000408703 91 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 RNA5SP146-201ENST00000410743 123 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 RPL7P30-201ENST00000420888 709 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SMARCA1P28370 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 MTND1P28-201ENST00000435623 950 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.91□□□□□ -1.62
SMARCA1P28370 NUTF2P3-201ENST00000448540 384 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 RNA5SP269-201ENST00000459032 137 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 PTP4A1P6-201ENST00000531034 478 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 CYCSP29-201ENST00000533731 318 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.91□□□□□ -1.62
SMARCA1P28370 MIR4637-201ENST00000582405 84 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 MIR3939-201ENST00000582614 106 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.91□□□□□ -1.62
SMARCA1P28370 MIR548AB-201ENST00000584917 84 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AL590392.1-201ENST00000604960 446 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AL021997.1-201ENST00000605757 193 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AC078899.5-201ENST00000612475 178 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 AC005332.10-201ENST00000612725 619 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.91□□□□□ -1.62
SMARCA1P28370 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.91□□□□□ -1.62
SMARCA1P28370 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.91□□□□□ -1.62
SMARCA1P28370 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SMARCA1P28370 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SMARCA1P28370 MTND4P4-201ENST00000439033 1366 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 LARP1BP1-201ENST00000506036 1359 ntBASIC4.91□□□□□ -1.62
SMARCA1P28370 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.91□□□□□ -1.62
SMARCA1P28370 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms