Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR181B1-201ENST00000385240 110 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 AL513477.1-202ENST00000417061 214 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 RWDD4P2-201ENST00000426392 563 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A3P25940 RWDD4P1-201ENST00000488019 565 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.16□□□□□ -1.9
COL5A3P25940 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC010928.3-201ENST00000587712 541 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 MTND5P19-201ENST00000424872 1794 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 RAD1P1-201ENST00000231383 813 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A3P25940 AC069218.2-201ENST00000411665 344 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.16□□□□□ -1.9
COL5A3P25940 RPL23AP74-201ENST00000437246 471 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.16□□□□□ -1.9
COL5A3P25940 SNORA31.1-201ENST00000515993 133 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 SNORA31.5-201ENST00000516190 133 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC007423.1-201ENST00000605009 627 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.16□□□□□ -1.9
COL5A3P25940 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL5A3P25940 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
COL5A3P25940 AC026523.2-201ENST00000625039 7739 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.15□□□□□ -1.91
COL5A3P25940 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 DPH3P2-201ENST00000422618 250 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
COL5A3P25940 IFNA11P-201ENST00000446352 526 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 MRPL50P4-201ENST00000446432 475 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 RNU7-170P-201ENST00000459303 61 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 TXNP6-201ENST00000510190 310 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 AC008837.1-201ENST00000511513 412 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 AC108471.1-201ENST00000513977 287 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A3P25940 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.15□□□□□ -1.91
COL5A3P25940 YWHAZP1-201ENST00000556286 722 ntBASIC3.15□□□□□ -1.91
COL5A3P25940 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.15□□□□□ -1.91
COL5A3P25940 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.15□□□□□ -1.91
COL5A3P25940 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
COL5A3P25940 AL079342.1-201ENST00000401460 267 ntBASIC3.14□□□□□ -1.91
COL5A3P25940 ATP5F1P6-201ENST00000402768 767 ntBASIC3.14□□□□□ -1.91
COL5A3P25940 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.14□□□□□ -1.91
COL5A3P25940 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.14□□□□□ -1.91
COL5A3P25940 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.14□□□□□ -1.91
COL5A3P25940 AL162233.1-201ENST00000620014 944 ntBASIC3.14□□□□□ -1.91
COL5A3P25940 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A3P25940 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.14□□□□□ -1.91
COL5A3P25940 XPOTP1-201ENST00000443317 2398 ntBASIC3.14□□□□□ -1.91
COL5A3P25940 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL5A3P25940 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
COL5A3P25940 Z73965.1-201ENST00000623412 2297 ntBASIC3.14□□□□□ -1.91
COL5A3P25940 RNU1-87P-201ENST00000363727 170 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AL353705.4-201ENST00000449661 238 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 RPS27P29-201ENST00000463110 252 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC126182.1-201ENST00000478134 357 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.13□□□□□ -1.91
COL5A3P25940 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A3P25940 IGKV2-36-201ENST00000519999 223 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC009063.1-201ENST00000563342 702 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.13□□□□□ -1.91
COL5A3P25940 AC025754.2-201ENST00000606491 432 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 U4.3-201ENST00000621047 82 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC132825.8-201ENST00000640783 297 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A3P25940 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
COL5A3P25940 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A3P25940 FAM133CP-201ENST00000332869 704 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.13□□□□□ -1.91
COL5A3P25940 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL5A3P25940 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A3P25940 AL356806.1-201ENST00000422524 916 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 OR4G11P-201ENST00000492842 939 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC092045.1-201ENST00000495716 1231 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A3P25940 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL5A3P25940 DEFB122-202ENST00000569013 197 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A3P25940 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.13□□□□□ -1.91
COL5A3P25940 VN1R79P-201ENST00000593540 513 ntBASIC3.13□□□□□ -1.91
COL5A3P25940 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.13□□□□□ -1.91
COL5A3P25940 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.13□□□□□ -1.91
COL5A3P25940 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL5A3P25940 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.12□□□□□ -1.91
COL5A3P25940 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.12□□□□□ -1.91
COL5A3P25940 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.12□□□□□ -1.91
COL5A3P25940 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
COL5A3P25940 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
COL5A3P25940 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL5A3P25940 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL5A3P25940 RNU6-673P-201ENST00000365084 104 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms