Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CLDN3O15551 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.68□□□□□ -1.82
CLDN3O15551 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 RNA5SP197-201ENST00000363357 119 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AP002088.1-201ENST00000382740 395 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RNU6-921P-201ENST00000384361 107 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 MIR649-201ENST00000384843 97 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RNU6-837P-201ENST00000391056 108 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RNU6-932P-201ENST00000391108 106 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 TAF13P2-201ENST00000416876 286 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.68□□□□□ -1.82
CLDN3O15551 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.68□□□□□ -1.82
CLDN3O15551 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.68□□□□□ -1.82
CLDN3O15551 AL158053.1-201ENST00000441503 453 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC008264.1-201ENST00000447612 367 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AL136097.1-201ENST00000456945 913 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RNU7-140P-201ENST00000459546 60 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RPL5P24-201ENST00000463742 885 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 PLGLA-201ENST00000465668 449 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RPL32P34-201ENST00000486380 400 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 APOOP4-201ENST00000513530 597 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RN7SKP60-201ENST00000516985 239 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RNU6-1073P-201ENST00000517182 106 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC107934.2-201ENST00000518653 310 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.68□□□□□ -1.82
CLDN3O15551 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC113192.3-201ENST00000529152 742 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AP003385.6-201ENST00000531603 374 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.68□□□□□ -1.82
CLDN3O15551 CCDC58P3-201ENST00000590792 430 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 AP005229.2-201ENST00000609980 697 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 AC110801.1-201ENST00000623590 212 ntBASIC3.68□□□□□ -1.82
CLDN3O15551 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.68□□□□□ -1.82
CLDN3O15551 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CLDN3O15551 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.67□□□□□ -1.82
CLDN3O15551 SNORD46.1-201ENST00000364139 104 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 RNVU1-14-201ENST00000384770 164 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 GSTA8P-201ENST00000404253 637 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 RN7SKP285-201ENST00000410137 318 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC126124.2-201ENST00000413542 321 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC009237.5-201ENST00000414271 501 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC009237.2-201ENST00000421358 284 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 RPF2P1-201ENST00000424137 906 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.67□□□□□ -1.82
CLDN3O15551 RPL21P66-201ENST00000426566 466 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 VDAC1P3-201ENST00000434069 851 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.67□□□□□ -1.82
CLDN3O15551 RPL12P26-201ENST00000452430 487 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.67□□□□□ -1.82
CLDN3O15551 RPS4XP10-201ENST00000465034 731 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.67□□□□□ -1.82
CLDN3O15551 RPL21P13-201ENST00000488305 481 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC020893.1-201ENST00000502452 580 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 HSPD1P15-201ENST00000505573 1122 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 MTCO3P44-201ENST00000510977 541 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC109471.1-201ENST00000511631 612 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.67□□□□□ -1.82
CLDN3O15551 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.67□□□□□ -1.82
CLDN3O15551 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.67□□□□□ -1.82
CLDN3O15551 AC011602.1-201ENST00000546484 331 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.67□□□□□ -1.82
CLDN3O15551 MIR3690-201ENST00000580266 75 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 MIR4276-201ENST00000584832 70 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 AL669831.4-202ENST00000590817 238 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 AC008121.2-201ENST00000614647 523 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.67□□□□□ -1.82
CLDN3O15551 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.67□□□□□ -1.82
CLDN3O15551 U6.98-201ENST00000637157 84 ntBASIC3.67□□□□□ -1.82
CLDN3O15551 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.67□□□□□ -1.82
CLDN3O15551 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
CLDN3O15551 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CLDN3O15551 Z83843.1-201ENST00000604070 3685 ntBASIC3.66□□□□□ -1.82
CLDN3O15551 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLDN3O15551 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.66□□□□□ -1.82
CLDN3O15551 CR383658.2-201ENST00000547576 1525 ntBASIC3.66□□□□□ -1.82
CLDN3O15551 AP001350.1-201ENST00000601906 1524 ntBASIC3.66□□□□□ -1.82
CLDN3O15551 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CLDN3O15551 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CLDN3O15551 Y_RNA.110-201ENST00000363220 99 ntBASIC3.66□□□□□ -1.82
CLDN3O15551 RNA5SP267-201ENST00000364893 126 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms