Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 DDX10P1-201ENST00000448545 1933 ntBASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.93□□□□□ -1.46
PCDHGA11Q9Y5H2 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 RN7SKP184-201ENST00000362348 333 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 Y_RNA.404-201ENST00000383978 102 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 ENSAP1-201ENST00000392855 326 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 RNU6-293P-201ENST00000411259 106 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AL354707.3-201ENST00000427308 331 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 FTLP19-201ENST00000433300 394 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CEACAMP1-201ENST00000434624 1035 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC013403.1-201ENST00000436954 263 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 RPL12P49-201ENST00000441100 121 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CYCSP51-201ENST00000443545 318 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC010655.3-201ENST00000478818 450 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC008945.1-201ENST00000505144 499 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MRPS5P3-201ENST00000515577 166 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AP000859.1-201ENST00000525536 307 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CYCSP27-201ENST00000527643 293 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MT1CP-201ENST00000567054 174 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC141002.1-201ENST00000607025 279 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC015982.1-201ENST00000608113 465 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC007998.5-201ENST00000622938 237 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 AC110801.1-201ENST00000623590 212 ntBASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.92□□□□□ -1.46
PCDHGA11Q9Y5H2 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC000374.1-201ENST00000434698 1745 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 Y_RNA.153-201ENST00000363615 91 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 DEFB109C-201ENST00000382575 264 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 DEFB109B-201ENST00000382656 264 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 Y_RNA.493-201ENST00000384422 102 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 SNORA16.2-201ENST00000390991 127 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 RNU6-101P-201ENST00000410323 104 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC080125.1-201ENST00000414888 684 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AL353597.2-202ENST00000434901 373 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 HIGD1AP11-201ENST00000438361 280 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 HMGB1P12-201ENST00000438594 598 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC010683.1-201ENST00000473673 378 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 HIGD1AP14-201ENST00000507617 282 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 RNU6-323P-201ENST00000521915 107 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC026371.1-201ENST00000551867 419 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC005899.2-201ENST00000584353 90 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC174048.1-201ENST00000603389 144 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AC104695.3-201ENST00000604052 296 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 AL158032.1-201ENST00000605401 106 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 HMGB1P24-202ENST00000615653 685 ntBASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.91□□□□□ -1.46
PCDHGA11Q9Y5H2 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms