Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC073387.2-201ENST00000604797 784 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC109454.4-201ENST00000623411 649 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC104985.3-201ENST00000623479 597 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AP003485.1-201ENST00000625093 753 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC011978.2-201ENST00000569835 2054 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 MTND5P27-201ENST00000428871 1720 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 RNU6-582P-201ENST00000362989 107 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 SNORA73.2-201ENST00000364946 201 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 RNU6-441P-201ENST00000384545 106 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 RNA5SP293-201ENST00000410527 113 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 MTND4P3-201ENST00000417829 541 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AL035423.1-201ENST00000420331 213 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 MOB1AP1-201ENST00000430903 535 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 MTCYBP42-201ENST00000444653 1130 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 HMGN2P21-201ENST00000447764 270 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AL359073.1-201ENST00000448036 403 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 RPL29P29-201ENST00000448725 423 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 NDUFA5P7-201ENST00000452914 242 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 ACTR3P3-201ENST00000480448 893 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC005726.1-201ENST00000494679 427 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC021146.5-201ENST00000503544 545 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC096571.1-202ENST00000506634 735 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC119751.4-201ENST00000507498 357 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 RNA5SP135-201ENST00000517019 125 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC091163.3-201ENST00000518269 1144 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AP001636.2-201ENST00000525517 696 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 OR8L1P-201ENST00000534005 955 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC006518.1-201ENST00000541449 943 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 CENPUP2-201ENST00000555897 1186 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC074051.3-201ENST00000570238 358 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC006130.2-201ENST00000586202 326 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 BNIP3P39-201ENST00000601077 554 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC096947.1-201ENST00000603233 470 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC112230.1-201ENST00000604342 547 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AL109618.2-201ENST00000605527 211 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AC119674.1-207ENST00000641355 633 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
SKA3Q8IX90 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA3Q8IX90 AL122126.1-201ENST00000546905 1318 ntBASIC3.19□□□□□ -1.9
SKA3Q8IX90 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 SRP72P2-201ENST00000344851 1979 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 HMGB1P5-201ENST00000255320 642 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNA5SP124-201ENST00000362739 110 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU5E-10P-201ENST00000363506 118 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU6-115P-201ENST00000364310 107 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU6-707P-201ENST00000364647 95 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU6-1226P-201ENST00000384317 107 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 SNORD116-23-201ENST00000384645 92 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 SSXP10-201ENST00000402595 565 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU6ATAC-201ENST00000408749 126 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 MTND4P22-201ENST00000413116 1169 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC013410.2-201ENST00000422627 201 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL035246.1-201ENST00000433554 1255 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 CKS1BP5-201ENST00000434172 273 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 MRPS31P2-201ENST00000451581 518 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 NPM1P13-201ENST00000452663 865 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 HMGN3P1-201ENST00000453847 193 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL672167.3-201ENST00000465951 960 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RPL5P23-201ENST00000496040 868 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 PRELID3BP6-201ENST00000503839 571 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 PTGES3P3-201ENST00000511479 482 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms