Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL161912.2-201ENST00000565707 3007 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 PABPC1P7-201ENST00000413177 1513 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC139769.1-204ENST00000472297 1931 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 SNORA4.1-201ENST00000364263 144 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 SNORD116-8-201ENST00000384365 95 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC108032.1-201ENST00000416706 207 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AL365203.2-201ENST00000423444 196 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AL022400.1-201ENST00000423946 935 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 TXNL1P1-201ENST00000429528 554 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RPL23AP25-201ENST00000430973 463 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC012671.1-201ENST00000451912 203 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 PLGLA-201ENST00000465668 449 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RPS15AP17-201ENST00000470598 390 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RPL21P103-201ENST00000479921 488 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 DEFB131D-201ENST00000526803 184 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC007834.2-201ENST00000536310 343 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC008015.1-201ENST00000555505 465 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AP001180.3-201ENST00000582221 145 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC008759.1-201ENST00000589783 983 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AL603755.1-201ENST00000619504 163 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC022079.1-201ENST00000621546 602 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 AC091905.2-201ENST00000623143 306 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 MTND5P24-201ENST00000438892 1767 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL28A1Q2UY09 NXPH1-205ENST00000602349 1953 ntBASIC4.11□□□□□ -1.75
COL28A1Q2UY09 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RNU1-63P-201ENST00000383902 164 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RNU6-1200P-201ENST00000384162 107 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ARF4P3-201ENST00000397387 509 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 SNRPEP2-201ENST00000397592 279 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL590084.2-201ENST00000401481 382 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RNU4-72P-201ENST00000410754 173 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 PIGPP2-201ENST00000411569 458 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 MTND2P18-201ENST00000419962 1030 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 PTP4A1P5-201ENST00000420305 455 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL035407.1-201ENST00000429211 571 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 COX6B1P7-201ENST00000430845 235 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC091286.1-201ENST00000431233 461 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 UBE2D3P1-201ENST00000436669 444 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RPL23AP43-201ENST00000446445 471 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RPL29P29-201ENST00000448725 423 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL133217.1-201ENST00000450980 425 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC026410.2-201ENST00000460281 156 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC146507.1-201ENST00000468335 354 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC108078.3-201ENST00000502633 489 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ATP1B1P1-201ENST00000509767 915 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 TMEM248P1-201ENST00000510579 951 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RNA5SP49-201ENST00000516450 115 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC008694.2-201ENST00000517591 306 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 IGLV3-26-201ENST00000520756 302 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 HSPA8P13-201ENST00000523715 472 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 CYCSP2-201ENST00000558168 301 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 YWHAQP7-201ENST00000603536 658 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL513477.2-201ENST00000607858 568 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC078883.4-201ENST00000623218 367 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AC079248.2-201ENST00000623779 326 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 SCARNA15.3-201ENST00000626315 122 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 SCARNA4.1-201ENST00000628597 123 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms