Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.39□□□□□ -1.87
COL18A1P39060 MTND4P10-201ENST00000446199 1363 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.39□□□□□ -1.87
COL18A1P39060 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
COL18A1P39060 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 MIR1289-2-201ENST00000408360 111 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 HMGB3P12-201ENST00000438745 556 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC118282.1-201ENST00000506408 765 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC008565.1-201ENST00000509046 885 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC119751.1-201ENST00000513357 765 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 SNORA9.3-201ENST00000516383 129 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 NPM1P52-201ENST00000518264 846 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 OR8L1P-201ENST00000534005 955 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC083760.1-201ENST00000589621 670 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.38□□□□□ -1.87
COL18A1P39060 LINC00901.1-201ENST00000617252 152 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL18A1P39060 AC138915.3-201ENST00000562908 1389 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
COL18A1P39060 SNORD114-30-201ENST00000364448 72 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AL355379.1-201ENST00000405542 640 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 RNU4-53P-201ENST00000410828 140 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 OR51A3P-201ENST00000413596 924 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC013470.3-201ENST00000420252 1194 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.38□□□□□ -1.87
COL18A1P39060 OR2B8P-201ENST00000432841 938 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AL590103.1-201ENST00000434488 307 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 RAB9AP5-201ENST00000437794 597 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 RAB9AP2-201ENST00000443911 597 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.38□□□□□ -1.87
COL18A1P39060 AC078899.3-201ENST00000599065 212 ntBASIC3.38□□□□□ -1.87
COL18A1P39060 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.38□□□□□ -1.87
COL18A1P39060 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.38□□□□□ -1.87
COL18A1P39060 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
COL18A1P39060 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL18A1P39060 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL18A1P39060 AC080125.1-201ENST00000414888 684 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AL591806.2-201ENST00000433122 173 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.37□□□□□ -1.87
COL18A1P39060 AC108210.2-201ENST00000503681 201 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.37□□□□□ -1.87
COL18A1P39060 RN7SKP24-201ENST00000515888 284 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.37□□□□□ -1.87
COL18A1P39060 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.37□□□□□ -1.87
COL18A1P39060 AC025811.1-201ENST00000604312 472 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.37□□□□□ -1.87
COL18A1P39060 AL589935.2-201ENST00000616471 1231 ntBASIC3.37□□□□□ -1.87
COL18A1P39060 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.37□□□□□ -1.87
COL18A1P39060 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.36□□□□□ -1.87
COL18A1P39060 MTCO1P22-201ENST00000604619 1360 ntBASIC3.36□□□□□ -1.87
COL18A1P39060 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.36□□□□□ -1.87
COL18A1P39060 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL18A1P39060 RNU4-26P-201ENST00000410270 107 ntBASIC3.36□□□□□ -1.87
COL18A1P39060 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
COL18A1P39060 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL18A1P39060 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.36□□□□□ -1.87
COL18A1P39060 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.36□□□□□ -1.87
COL18A1P39060 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.36□□□□□ -1.87
COL18A1P39060 AL135786.2-201ENST00000608422 615 ntBASIC3.36□□□□□ -1.87
COL18A1P39060 AC131238.1-201ENST00000617135 328 ntBASIC3.36□□□□□ -1.87
COL18A1P39060 AC103798.2-201ENST00000624292 632 ntBASIC3.36□□□□□ -1.87
COL18A1P39060 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.36□□□□□ -1.87
COL18A1P39060 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL18A1P39060 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.36□□□□□ -1.87
COL18A1P39060 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 AL079342.1-201ENST00000401460 267 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 FAM103A2P-201ENST00000444122 354 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AC008716.1-201ENST00000511084 513 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.35□□□□□ -1.87
COL18A1P39060 EIF4EP5-201ENST00000528228 640 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.35□□□□□ -1.87
COL18A1P39060 AC010928.3-201ENST00000587712 541 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.35□□□□□ -1.87
COL18A1P39060 AC011492.1-201ENST00000600023 315 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 AL354950.1-201ENST00000614150 568 ntBASIC3.35□□□□□ -1.87
COL18A1P39060 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL18A1P39060 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL18A1P39060 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.35□□□□□ -1.87
COL18A1P39060 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL18A1P39060 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms