Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.21□□□□□ -1.9
COL5A3P25940 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL5A3P25940 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.21□□□□□ -1.9
COL5A3P25940 AP002967.1-201ENST00000624203 539 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.21□□□□□ -1.9
COL5A3P25940 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.21□□□□□ -1.9
COL5A3P25940 OR4G1P-202ENST00000641173 1788 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COL5A3P25940 SNORD114-30-201ENST00000364448 72 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.2□□□□□ -1.9
COL5A3P25940 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL5A3P25940 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.2□□□□□ -1.9
COL5A3P25940 RNU4-53P-201ENST00000410828 140 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 Z98742.3-201ENST00000418637 326 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.2□□□□□ -1.9
COL5A3P25940 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.2□□□□□ -1.9
COL5A3P25940 EIF2S2P4-201ENST00000461070 984 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 AP000867.2-201ENST00000532468 320 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.2□□□□□ -1.9
COL5A3P25940 AC128657.1-201ENST00000549459 145 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.2□□□□□ -1.9
COL5A3P25940 AC025811.1-201ENST00000604312 472 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 AC007938.3-201ENST00000604965 623 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 MIR7153-201ENST00000637758 57 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 CRYM-AS1-204ENST00000637983 556 ntBASIC3.2□□□□□ -1.9
COL5A3P25940 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
COL5A3P25940 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL5A3P25940 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL5A3P25940 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.2□□□□□ -1.9
COL5A3P25940 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.19□□□□□ -1.9
COL5A3P25940 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL5A3P25940 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL5A3P25940 RNU4-26P-201ENST00000410270 107 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.19□□□□□ -1.9
COL5A3P25940 AL590399.6-201ENST00000446396 307 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 AL162388.1-201ENST00000450912 352 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 snoU13.23-201ENST00000458863 104 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.19□□□□□ -1.9
COL5A3P25940 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.19□□□□□ -1.9
COL5A3P25940 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.19□□□□□ -1.9
COL5A3P25940 AL133271.1-201ENST00000538229 291 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.19□□□□□ -1.9
COL5A3P25940 HMGB3P26-201ENST00000560051 582 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 AC078899.3-201ENST00000599065 212 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.19□□□□□ -1.9
COL5A3P25940 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.19□□□□□ -1.9
COL5A3P25940 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL5A3P25940 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL5A3P25940 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.19□□□□□ -1.9
COL5A3P25940 AC134882.1-201ENST00000603738 1676 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL5A3P25940 AC007342.7-201ENST00000624610 2337 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
COL5A3P25940 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
COL5A3P25940 AL512633.1-201ENST00000399931 655 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 FAM103A2P-201ENST00000444122 354 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 RNU6-1334P-201ENST00000516032 105 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.19□□□□□ -1.9
COL5A3P25940 MIR7111-201ENST00000619751 72 ntBASIC3.19□□□□□ -1.9
COL5A3P25940 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL5A3P25940 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL5A3P25940 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL5A3P25940 RNU1-100P-201ENST00000365255 165 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
COL5A3P25940 EI24P2-201ENST00000397776 1076 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 MIR1289-2-201ENST00000408360 111 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 RNA5SP247-201ENST00000411181 105 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 AC234781.4-201ENST00000419384 244 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.18□□□□□ -1.9
COL5A3P25940 OR2B8P-201ENST00000432841 938 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 AL590103.1-201ENST00000434488 307 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 RPS12P2-201ENST00000439728 269 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 RPL36AP51-201ENST00000487216 318 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.18□□□□□ -1.9
COL5A3P25940 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.18□□□□□ -1.9
COL5A3P25940 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.18□□□□□ -1.9
COL5A3P25940 AC068313.1-201ENST00000604028 1008 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL5A3P25940 AL356274.1-201ENST00000617064 410 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 AC004925.1-201ENST00000624256 2706 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 AL133412.1-201ENST00000380194 2992 ntBASIC3.18□□□□□ -1.9
COL5A3P25940 PNPT1P2-201ENST00000456768 2050 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.17□□□□□ -1.9
COL5A3P25940 MAPK10-322ENST00000641485 4530 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 SNORA70E-201ENST00000384492 135 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL5A3P25940 AL592437.1-201ENST00000443781 492 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 HIGD1AP2-201ENST00000446367 280 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 AC008280.2-201ENST00000455473 307 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 AC008565.1-201ENST00000509046 885 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.17□□□□□ -1.9
COL5A3P25940 MIR1273D-201ENST00000577266 86 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 AC004825.2-201ENST00000616634 455 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL5A3P25940 FRG1DP-201ENST00000635586 771 ntBASIC3.17□□□□□ -1.9
COL5A3P25940 AC092079.1-201ENST00000558620 1985 ntBASIC3.16□□□□□ -1.9
COL5A3P25940 MIR365B-201ENST00000362317 111 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms