Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DSTNP2-201ENST00000504533 515 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC026784.1-201ENST00000507986 352 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC005351.1-201ENST00000511152 786 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 RNU1-95P-201ENST00000516357 160 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 RNU1-128P-201ENST00000516704 160 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD4P09016 OR4A12P-201ENST00000530847 918 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC090695.1-201ENST00000561269 1222 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD4P09016 MIR4666A-201ENST00000580160 79 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC015726.1-201ENST00000602353 681 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL139344.1-201ENST00000605228 195 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AP003117.2-201ENST00000606010 545 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC097065.2-201ENST00000608159 533 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL391497.1-201ENST00000608671 547 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC128687.2-201ENST00000609657 566 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC012531.5-201ENST00000611375 151 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL592295.2-201ENST00000612578 206 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC012314.7-201ENST00000619693 93 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 FP236240.3-201ENST00000623061 327 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC124312.6-202ENST00000623624 418 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC087821.2-201ENST00000637086 450 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 MFSD8-245ENST00000641743 948 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC009093.8-201ENST00000641769 292 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 ZNF285B-201ENST00000561698 1767 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD4P09016 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD4P09016 NACA3P-201ENST00000359690 648 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 RNA5SP391-201ENST00000363456 119 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 RNA5SP399-201ENST00000364003 117 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 SNORA51.12-201ENST00000384448 134 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 AC008065.1-201ENST00000428525 348 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD4P09016 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD4P09016 RPL21P110-201ENST00000433345 446 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 UBE2V1P5-201ENST00000440070 405 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXD4P09016 NANOGP10-201ENST00000453325 895 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 HMGN2P7-201ENST00000456186 273 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 CEACAMP4-201ENST00000457676 421 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AP000563.1-201ENST00000490865 758 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AC034244.1-201ENST00000507687 207 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD4P09016 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 ZNF321P-202ENST00000550843 495 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 DUXAP6-201ENST00000553858 601 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD4P09016 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 SRGNP1-201ENST00000603392 451 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AC007179.3-201ENST00000604976 235 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AC105429.2-201ENST00000610567 517 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AC091304.6-201ENST00000619761 202 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AC017037.3-201ENST00000625016 472 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 AL034408.1-202ENST00000636088 415 ntBASIC3.5□□□□□ -1.85
HOXD4P09016 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD4P09016 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD4P09016 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
HOXD4P09016 USP8P1-201ENST00000494673 3183 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC024560.2-201ENST00000507981 1497 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 ZNF826P-207ENST00000622273 1910 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AL512646.1-201ENST00000269395 1077 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 RNU6-1214P-201ENST00000363650 109 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 RNU6-83P-201ENST00000384568 112 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 PTMAP5-201ENST00000393073 333 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD4P09016 MTCO3P31-201ENST00000405526 789 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 RPL31P45-201ENST00000419532 356 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC091286.1-201ENST00000431233 461 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 HMGB1P37-201ENST00000439613 609 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms