Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC009063.1-201ENST00000563342 702 ntBASIC4.31□□□□□ -1.72
CCDC88BA6NC98 MIR1273D-201ENST00000577266 86 ntBASIC4.31□□□□□ -1.72
CCDC88BA6NC98 AC025811.1-201ENST00000604312 472 ntBASIC4.31□□□□□ -1.72
CCDC88BA6NC98 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC88BA6NC98 OR51A3P-201ENST00000413596 924 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 snoU13.23-201ENST00000458863 104 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 PDCL2P2-201ENST00000533651 189 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC069528.2-201ENST00000624849 1991 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC092881.1-201ENST00000638218 2733 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AL135786.1-201ENST00000415892 214 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 RPS12P2-201ENST00000439728 269 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC002553.2-201ENST00000453217 340 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AP001207.1-201ENST00000524051 481 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC88BA6NC98 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 AL021368.2-201ENST00000606125 5352 ntBASIC4.3□□□□□ -1.72
CCDC88BA6NC98 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 AC134882.1-201ENST00000603738 1676 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 RAP1BP1-201ENST00000412709 553 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 ZYG11AP1-201ENST00000430329 837 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 Z99127.2-201ENST00000441426 334 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 AC103975.1-201ENST00000482506 483 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 AC090312.2-201ENST00000582687 378 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 AC046143.2-201ENST00000609789 160 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.29□□□□□ -1.72
CCDC88BA6NC98 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC88BA6NC98 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 RNA5SP456-201ENST00000364002 114 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 RPS3AP26-201ENST00000398259 784 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 RPS15AP6-201ENST00000420703 385 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 AL356806.1-201ENST00000422524 916 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 HMGN2P3-201ENST00000433603 273 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 HMGN2P5-201ENST00000436882 273 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 AL662791.1-201ENST00000441992 928 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 OR4A45P-201ENST00000529954 901 ntBASIC4.28□□□□□ -1.72
CCDC88BA6NC98 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC88BA6NC98 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC88BA6NC98 MIR3074-201ENST00000384885 81 ntBASIC4.27□□□□□ -1.73
CCDC88BA6NC98 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC88BA6NC98 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC88BA6NC98 AC123904.3-201ENST00000547218 814 ntBASIC4.27□□□□□ -1.73
CCDC88BA6NC98 FRG1DP-201ENST00000635586 771 ntBASIC4.27□□□□□ -1.73
CCDC88BA6NC98 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC88BA6NC98 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AL024474.1-201ENST00000404655 591 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AL513477.1-202ENST00000417061 214 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AL034379.1-201ENST00000423216 253 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 CKS1BP7-201ENST00000522230 235 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AC055876.1-202ENST00000567053 138 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AC078899.3-201ENST00000599065 212 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 AC009159.1-201ENST00000618386 642 ntBASIC4.26□□□□□ -1.73
CCDC88BA6NC98 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88BA6NC98 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 AL603825.1-201ENST00000438481 80 ntBASIC4.25□□□□□ -1.73
CCDC88BA6NC98 HMGB3P12-201ENST00000438745 556 ntBASIC4.25□□□□□ -1.73
CCDC88BA6NC98 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 RPL23AP45-201ENST00000476406 468 ntBASIC4.25□□□□□ -1.73
CCDC88BA6NC98 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 RPL23AP84-201ENST00000571193 464 ntBASIC4.25□□□□□ -1.73
CCDC88BA6NC98 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC88BA6NC98 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 RNA5SP210-201ENST00000391034 120 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AC008837.1-201ENST00000511513 412 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 RNA5SP380-201ENST00000517190 98 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 MIR1291-201ENST00000627649 87 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 Z73965.1-201ENST00000623412 2297 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms