Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
ABCA1O95477 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
ABCA1O95477 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA1O95477 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA1O95477 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ABCA1O95477 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA1O95477 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.1■□□□□ 0.17
ABCA1O95477 CCR12P-201ENST00000446203 998 ntBASIC16.1■□□□□ 0.17
ABCA1O95477 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA1O95477 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA1O95477 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA1O95477 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA1O95477 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
ABCA1O95477 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA1O95477 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA1O95477 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
ABCA1O95477 AC007225.1-201ENST00000566331 1836 ntBASIC16.09■□□□□ 0.17
ABCA1O95477 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA1O95477 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA1O95477 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ABCA1O95477 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 TUBB8P6-201ENST00000436895 1288 ntBASIC16.09■□□□□ 0.17
ABCA1O95477 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA1O95477 KRT18P16-201ENST00000510337 1294 ntBASIC16.09■□□□□ 0.17
ABCA1O95477 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA1O95477 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.09■□□□□ 0.17
ABCA1O95477 AC011298.2-201ENST00000617989 482 ntBASIC16.09■□□□□ 0.17
ABCA1O95477 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
ABCA1O95477 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ABCA1O95477 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA1O95477 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA1O95477 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 AC004980.1-204ENST00000429707 299 ntBASIC16.08■□□□□ 0.17
ABCA1O95477 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 TSPY17P-201ENST00000450329 467 ntBASIC16.08■□□□□ 0.17
ABCA1O95477 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.08■□□□□ 0.17
ABCA1O95477 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.08■□□□□ 0.17
ABCA1O95477 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA1O95477 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA1O95477 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA1O95477 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.08■□□□□ 0.16
ABCA1O95477 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.08■□□□□ 0.16
ABCA1O95477 AC008622.2-201ENST00000617006 1229 ntBASIC16.08■□□□□ 0.16
ABCA1O95477 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA1O95477 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.08■□□□□ 0.16
ABCA1O95477 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA1O95477 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
ABCA1O95477 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
ABCA1O95477 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
ABCA1O95477 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA1O95477 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.07■□□□□ 0.16
ABCA1O95477 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
ABCA1O95477 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ABCA1O95477 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA1O95477 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.07■□□□□ 0.16
ABCA1O95477 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.07■□□□□ 0.16
ABCA1O95477 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 AC083849.1-201ENST00000615227 514 ntBASIC16.07■□□□□ 0.16
ABCA1O95477 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 AC092338.2-201ENST00000568827 1415 ntBASIC16.07■□□□□ 0.16
ABCA1O95477 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
ABCA1O95477 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ABCA1O95477 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA1O95477 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ABCA1O95477 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms