Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC020914.4-201ENST00000597690 277 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AL445435.1-201ENST00000604232 665 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 HMGN2P28-201ENST00000606102 262 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MIR7851-201ENST00000610611 160 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MIR6075-201ENST00000620782 95 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC004808.1-201ENST00000627671 721 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC244205.2-202ENST00000635781 342 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC068647.1-201ENST00000489539 2265 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MTND4P9-201ENST00000507819 1346 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 OTUD4P1-201ENST00000237841 3067 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RNU4-35P-201ENST00000362588 141 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RNU6-251P-201ENST00000363235 104 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RNA5SP235-201ENST00000365411 114 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MIR490-201ENST00000384865 128 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MT-TC-201ENST00000387405 66 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 SNORD17-201ENST00000390930 237 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MTCO1P56-201ENST00000401674 224 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL023807.1-201ENST00000407932 359 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL136133.1-201ENST00000413694 376 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC068533.1-201ENST00000418542 415 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RPS6P14-201ENST00000425165 719 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC241584.1-201ENST00000438469 1241 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC092393.1-201ENST00000439625 742 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC104073.1-201ENST00000451988 151 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 MTCO3P16-201ENST00000454456 754 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC007967.1-201ENST00000455422 1159 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC023598.1-201ENST00000472521 361 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC010301.1-201ENST00000473936 355 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC104982.1-201ENST00000478775 574 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 RN7SL293P-201ENST00000481765 281 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AP000926.4-201ENST00000527351 454 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC026333.2-201ENST00000542164 106 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 DUXAP6-201ENST00000553858 601 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC007424.1-203ENST00000554613 687 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC006270.2-201ENST00000578523 652 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC090616.5-202ENST00000582111 297 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC067852.3-201ENST00000589177 561 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL022067.1-201ENST00000602426 454 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC113368.1-201ENST00000603736 382 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 IGHV3-29-201ENST00000604817 344 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC092354.2-201ENST00000607786 514 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL133445.2-201ENST00000611191 527 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL391261.4-201ENST00000616012 481 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AL157770.1-201ENST00000623049 439 ntBASIC3.54□□□□□ -1.84
LHX3Q9UBR4 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
LHX3Q9UBR4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC000367.1-201ENST00000452711 1766 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 RNU6-1066P-201ENST00000363573 105 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 MIR183-201ENST00000384958 110 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.53□□□□□ -1.84
LHX3Q9UBR4 AL133384.1-201ENST00000412744 351 ntBASIC3.53□□□□□ -1.84
LHX3Q9UBR4 BOLA3P4-201ENST00000418151 400 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms