Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC023598.1-201ENST00000472521 361 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 CYB5AP5-201ENST00000549779 389 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC006116.10-201ENST00000591836 581 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 IGHV3-29-201ENST00000604817 344 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL365503.1-201ENST00000605247 905 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 MIR7851-201ENST00000610611 160 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC139713.2-210ENST00000641741 992 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 RNU6-283P-201ENST00000364788 107 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 Y_RNA.493-201ENST00000384422 102 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 MT-TC-201ENST00000387405 66 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL121978.1-201ENST00000402778 359 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL139098.1-201ENST00000407291 389 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 MTND2P16-201ENST00000419987 799 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL513174.1-201ENST00000423182 629 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 GOT2P5-201ENST00000433995 546 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 RN7SL594P-201ENST00000470590 287 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 SYPL1P1-201ENST00000473622 768 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 RPL21P129-201ENST00000491732 478 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC006499.5-201ENST00000505037 514 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 MTND1P36-201ENST00000522384 936 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 IGHV3-76-201ENST00000522465 295 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 IGKV2D-19-201ENST00000523346 262 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS35Q96QK1 OR5D17P-201ENST00000531492 978 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC010735.1-201ENST00000567305 1026 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC025588.3-201ENST00000604182 274 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC018754.1-201ENST00000607486 925 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 RMST_8.1-201ENST00000610287 165 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS35Q96QK1 AL354976.1-201ENST00000613843 387 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS35Q96QK1 MIR7153-201ENST00000637758 57 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 AC006927.2-201ENST00000639256 389 ntBASIC3.53□□□□□ -1.84
VPS35Q96QK1 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS35Q96QK1 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
VPS35Q96QK1 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS35Q96QK1 AC007656.2-201ENST00000624902 4547 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS35Q96QK1 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS35Q96QK1 AL365440.1-201ENST00000436135 2167 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS35Q96QK1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
VPS35Q96QK1 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS35Q96QK1 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS35Q96QK1 AL049781.1-201ENST00000623195 3585 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 RNU6-263P-201ENST00000363811 107 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 RNU6-115P-201ENST00000364310 107 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 SNORA7.2-201ENST00000364446 145 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS35Q96QK1 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS35Q96QK1 MIR449B-201ENST00000384995 97 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 ATP5F1P3-201ENST00000397213 657 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 TMSB4XP8-201ENST00000402089 135 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 RN7SKP27-201ENST00000410684 333 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 RNU6-575P-201ENST00000411326 105 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 TMSB4XP6-201ENST00000415187 135 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS35Q96QK1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS35Q96QK1 TMSB4XP1-201ENST00000424567 135 ntBASIC3.52□□□□□ -1.85
VPS35Q96QK1 OSTCP5-201ENST00000425293 453 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms