Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC090229.1-201ENST00000590983 1609 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 MIR518C-201ENST00000384822 101 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL590004.2-201ENST00000404787 371 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RANP4-201ENST00000413361 655 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RPL23AP23-201ENST00000452590 471 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 OR4K7P-201ENST00000580232 945 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC107081.3-201ENST00000612715 2034 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CPD-202ENST00000543464 4007 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC104446.1-201ENST00000613728 1321 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RN7SL499P-201ENST00000481141 276 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CKS1BP1-201ENST00000555221 240 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL355493.4-201ENST00000618530 292 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 MTCO1P8-201ENST00000416914 1523 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL645939.1-201ENST00000453429 797 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC006445.2-201ENST00000510061 472 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC064859.1-201ENST00000624741 174 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC092184.1-201ENST00000625042 715 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 ATM-230ENST00000640388 578 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 PWAR6-201ENST00000552334 4618 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RSL24D1P4-201ENST00000400938 484 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 GTF2IP23-201ENST00000423746 351 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 HMGB3P12-201ENST00000438745 556 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 Z99127.3-201ENST00000448158 395 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC010655.1-201ENST00000449336 292 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 MTCO3P20-201ENST00000454926 688 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AP000926.4-201ENST00000527351 454 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CD24P2-201ENST00000565486 219 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 SNORD114-30-201ENST00000364448 72 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 SNORA62.2-201ENST00000364672 152 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC245291.1-201ENST00000419501 328 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 FTH1P6-201ENST00000430768 320 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RPS27AP9-201ENST00000477681 438 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 CBX3P5-201ENST00000552017 521 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC125238.1-201ENST00000448842 249 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 VTA1P2-201ENST00000520205 911 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 ATP5F1P7-201ENST00000567330 760 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC0.88□□□□□ -2.27
SYNE1Q8NF91 VN1R79P-201ENST00000593540 513 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC022509.4-201ENST00000621404 572 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 AC084035.1-201ENST00000634543 607 ntBASIC0.88□□□□□ -2.27
SYNE1Q8NF91 RNA5SP184-201ENST00000411071 108 ntBASIC0.87□□□□□ -2.27
SYNE1Q8NF91 SNRPFP2-201ENST00000440710 251 ntBASIC0.87□□□□□ -2.27
SYNE1Q8NF91 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC0.87□□□□□ -2.27
SYNE1Q8NF91 RPL23AP73-201ENST00000492507 471 ntBASIC0.87□□□□□ -2.27
SYNE1Q8NF91 AC022080.3-201ENST00000544433 482 ntBASIC0.87□□□□□ -2.27
SYNE1Q8NF91 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC0.87□□□□□ -2.27
SYNE1Q8NF91 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC0.87□□□□□ -2.27
SYNE1Q8NF91 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms