Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC010301.1-201ENST00000473936 355 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 HMGB1P22-201ENST00000505315 124 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RAC1P2-201ENST00000511164 579 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 MTCO2P32-201ENST00000514865 403 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RNA5SP135-201ENST00000517019 125 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 ARL2BPP5-201ENST00000523141 481 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 OR4R2P-201ENST00000530815 597 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 MTND5P21-201ENST00000531961 522 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 CYB5AP5-201ENST00000549779 389 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 MIR4298-201ENST00000584380 73 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC020914.4-201ENST00000597690 277 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC110741.2-201ENST00000605278 268 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RPL21P136-201ENST00000605378 396 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AL158211.2-201ENST00000607282 395 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC243312.2-201ENST00000623340 601 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 U6.98-201ENST00000637157 84 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC007256.1-201ENST00000392253 2765 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC027287.1-201ENST00000553115 1453 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 MTND4LP20-201ENST00000402379 270 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RNA5SP129-201ENST00000410276 118 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RAD23BP2-201ENST00000416003 1207 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 FNDC3CP-201ENST00000420795 1155 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC011742.1-201ENST00000431448 434 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC000041.1-201ENST00000439655 175 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RPL21P23-201ENST00000446654 460 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RPL7P52-201ENST00000449200 742 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RPS24P6-201ENST00000452670 400 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 HMGB1P15-201ENST00000453854 435 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 MTCO3P2-201ENST00000457365 171 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RPL21P18-201ENST00000469899 480 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RN7SL601P-201ENST00000471221 293 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC017015.1-201ENST00000477387 286 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AL024509.2-201ENST00000493462 493 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RNU6-885P-201ENST00000516607 104 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC093519.1-201ENST00000566109 298 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC128687.1-201ENST00000605304 619 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 RNU1-30P-201ENST00000606575 163 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AP003392.5-201ENST00000607857 415 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC079684.1-201ENST00000621405 437 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 AC244258.1-201ENST00000637553 1071 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 MTND2P41-201ENST00000637599 773 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HDDC3Q8N4P3 UBE3AP2-201ENST00000429033 2259 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 IPO8P1-201ENST00000455509 3109 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNU6-50P-201ENST00000362356 103 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNU6-582P-201ENST00000362989 107 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNU6-1249P-201ENST00000363237 111 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNU5B-1-201ENST00000363286 116 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNA5SP267-201ENST00000364893 126 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 RNU6-821P-201ENST00000390995 107 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 SOD2P1-201ENST00000396543 562 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 AL355615.1-201ENST00000406187 641 ntBASIC3.75□□□□□ -1.81
HDDC3Q8N4P3 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms