Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CHD3Q12873 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CHD3Q12873 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.61□□□□□ -1.99
CHD3Q12873 OR5J1P-201ENST00000313544 939 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AC006960.1-201ENST00000419980 153 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 OR2B8P-201ENST00000432841 938 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.61□□□□□ -1.99
CHD3Q12873 TRBV12-1-201ENST00000479785 344 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 HMGB1P3-201ENST00000502802 616 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
CHD3Q12873 AC118282.1-201ENST00000506408 765 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AC119751.1-201ENST00000513357 765 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AC034159.1-201ENST00000513885 583 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 RNU1-41P-201ENST00000516161 162 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 RNU1-48P-201ENST00000516400 162 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 RNU6-943P-201ENST00000516960 98 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.61□□□□□ -1.99
CHD3Q12873 AC010306.1-201ENST00000523223 1117 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 EIF5A2P1-201ENST00000564027 460 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 HMGB1P6-201ENST00000569046 646 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 ELOCP29-201ENST00000588193 334 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 TUG1_1.1-201ENST00000610654 145 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 MIR622-201ENST00000638396 96 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.61□□□□□ -1.99
CHD3Q12873 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
CHD3Q12873 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 DYNLT3P1-201ENST00000378574 347 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 SNORA26.7-201ENST00000391288 122 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.61□□□□□ -1.99
CHD3Q12873 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC2.61□□□□□ -1.99
CHD3Q12873 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 AC022022.1-201ENST00000430304 178 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 UBE2V2P1-201ENST00000434717 398 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 HSPE1P28-201ENST00000443139 211 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.61□□□□□ -1.99
CHD3Q12873 HMGB3P6-201ENST00000444896 598 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 AL590639.1-201ENST00000456484 337 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 RPS17P11-201ENST00000474297 293 ntBASIC2.61□□□□□ -1.99
CHD3Q12873 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CHD3Q12873 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
CHD3Q12873 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CHD3Q12873 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CHD3Q12873 FAM35BP-202ENST00000497389 3337 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
CHD3Q12873 XGY1-201ENST00000381172 446 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 AC013268.2-201ENST00000420753 337 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 RPL36AP33-201ENST00000450395 310 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.6□□□□□ -1.99
CHD3Q12873 AP002371.1-201ENST00000463604 433 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.6□□□□□ -1.99
CHD3Q12873 AC009812.2-201ENST00000517657 457 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 AC109329.2-201ENST00000519658 482 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 AP004242.1-201ENST00000533701 349 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.6□□□□□ -1.99
CHD3Q12873 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.6□□□□□ -1.99
CHD3Q12873 AL590808.1-201ENST00000618696 141 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 PLCE1P1-201ENST00000622094 305 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC2.6□□□□□ -1.99
CHD3Q12873 AC000403.1-201ENST00000613696 3585 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.6□□□□□ -1.99
CHD3Q12873 AP003122.5-201ENST00000527668 3766 ntBASIC2.6□□□□□ -1.99
CHD3Q12873 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CHD3Q12873 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC2.6□□□□□ -1.99
CHD3Q12873 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CHD3Q12873 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.59□□□□□ -1.99
CHD3Q12873 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CHD3Q12873 MIR1261-201ENST00000408659 82 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 VN1R31P-201ENST00000417498 730 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC2.59□□□□□ -1.99
CHD3Q12873 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.59□□□□□ -1.99
CHD3Q12873 HMGB1P5-202ENST00000451497 985 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AL109933.2-201ENST00000452651 260 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 RN7SL75P-201ENST00000461926 281 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 RNA5SP367-201ENST00000516557 118 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 SMARCE1P4-201ENST00000523647 241 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.59□□□□□ -1.99
CHD3Q12873 AP002404.1-201ENST00000532005 451 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.59□□□□□ -1.99
CHD3Q12873 MIR4435-1-201ENST00000582552 80 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.59□□□□□ -1.99
CHD3Q12873 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.59□□□□□ -1.99
CHD3Q12873 AC024153.1-201ENST00000603103 365 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AC007619.2-201ENST00000605743 379 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AC016877.3-201ENST00000606778 504 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 AC245100.7-201ENST00000609678 442 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CHD3Q12873 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CHD3Q12873 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CHD3Q12873 MTND5P7-201ENST00000413558 1798 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
CHD3Q12873 ELF2P3-201ENST00000445099 1506 ntBASIC2.59□□□□□ -1.99
CHD3Q12873 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
CHD3Q12873 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.59□□□□□ -2
CHD3Q12873 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.59□□□□□ -2
CHD3Q12873 MIR591-201ENST00000385290 95 ntBASIC2.59□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms