Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC022034.3-201ENST00000471393 478 ntBASIC5.17□□□□□ -1.58
RNF4P78317 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.17□□□□□ -1.58
RNF4P78317 AC092436.1-201ENST00000506450 503 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.17□□□□□ -1.58
RNF4P78317 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 RNA5SP362-201ENST00000516048 118 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 AC011979.2-201ENST00000527568 352 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.17□□□□□ -1.58
RNF4P78317 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.17□□□□□ -1.58
RNF4P78317 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 FRG2DP-202ENST00000566967 323 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC015720.2-201ENST00000567709 334 ntBASIC5.17□□□□□ -1.58
RNF4P78317 MIR3171-201ENST00000584270 74 ntBASIC5.17□□□□□ -1.58
RNF4P78317 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.17□□□□□ -1.58
RNF4P78317 AC018809.2-201ENST00000602436 3823 ntBASIC5.17□□□□□ -1.58
RNF4P78317 MIR6768-201ENST00000610734 72 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC244100.1-202ENST00000621554 382 ntBASIC5.17□□□□□ -1.58
RNF4P78317 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.17□□□□□ -1.58
RNF4P78317 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 AL122126.1-201ENST00000546905 1318 ntBASIC5.17□□□□□ -1.58
RNF4P78317 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 STX3-208ENST00000641815 3236 ntBASIC5.17□□□□□ -1.58
RNF4P78317 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
RNF4P78317 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.17□□□□□ -1.58
RNF4P78317 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 AC091046.3-201ENST00000631455 1574 ntBASIC5.16□□□□□ -1.58
RNF4P78317 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.16□□□□□ -1.58
RNF4P78317 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 AC004817.4-201ENST00000602396 3625 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.16□□□□□ -1.58
RNF4P78317 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 OR4F13P-202ENST00000560066 2054 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC244517.1-201ENST00000606030 2086 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 Y_RNA.216-201ENST00000364205 93 ntBASIC5.16□□□□□ -1.58
RNF4P78317 RNU6-38P-201ENST00000384085 107 ntBASIC5.16□□□□□ -1.58
RNF4P78317 SNORA5.1-201ENST00000384275 131 ntBASIC5.16□□□□□ -1.58
RNF4P78317 RNA5SP187-201ENST00000384400 119 ntBASIC5.16□□□□□ -1.58
RNF4P78317 MIR606-201ENST00000384851 96 ntBASIC5.16□□□□□ -1.58
RNF4P78317 U3.25-201ENST00000391209 220 ntBASIC5.16□□□□□ -1.58
RNF4P78317 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 MIR548P-201ENST00000408336 84 ntBASIC5.16□□□□□ -1.58
RNF4P78317 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 GPM6BP2-201ENST00000432046 144 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.16□□□□□ -1.58
RNF4P78317 OR6D1P-201ENST00000436165 939 ntBASIC5.16□□□□□ -1.58
RNF4P78317 HMGB3P11-201ENST00000440127 604 ntBASIC5.16□□□□□ -1.58
RNF4P78317 GPM6BP1-201ENST00000446387 144 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 RNU6-333P-201ENST00000459117 107 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.16□□□□□ -1.58
RNF4P78317 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 MYL12AP1-201ENST00000518490 515 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 AP005435.4-201ENST00000529514 284 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.16□□□□□ -1.58
RNF4P78317 NCAPGP2-201ENST00000557911 754 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.16□□□□□ -1.58
RNF4P78317 MTCYBP13-201ENST00000578634 1093 ntBASIC5.16□□□□□ -1.58
RNF4P78317 RN7SL753P-201ENST00000581238 290 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC012616.1-201ENST00000600294 197 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC040896.1-201ENST00000613819 479 ntBASIC5.16□□□□□ -1.58
RNF4P78317 AC132068.1-201ENST00000623805 459 ntBASIC5.16□□□□□ -1.58
RNF4P78317 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
RNF4P78317 MTCO1P9-201ENST00000505577 1534 ntBASIC5.16□□□□□ -1.58
RNF4P78317 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
RNF4P78317 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
RNF4P78317 AC068870.1-201ENST00000563737 2455 ntBASIC5.16□□□□□ -1.58
RNF4P78317 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
RNF4P78317 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.16□□□□□ -1.58
RNF4P78317 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
RNF4P78317 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
RNF4P78317 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
RNF4P78317 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
RNF4P78317 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.15□□□□□ -1.58
RNF4P78317 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
RNF4P78317 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
RNF4P78317 AC004972.1-201ENST00000623934 2209 ntBASIC5.15□□□□□ -1.58
RNF4P78317 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms