Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC026979.1-201ENST00000492525 396 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.96□□□□□ -1.62
SMARCA1P28370 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 KCTD9P2-201ENST00000512203 1013 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC018797.3-201ENST00000513388 1241 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC006499.2-201ENST00000513470 337 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 RN7SKP122-201ENST00000515923 296 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC008694.2-201ENST00000517591 306 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.96□□□□□ -1.62
SMARCA1P28370 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.96□□□□□ -1.62
SMARCA1P28370 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.96□□□□□ -1.62
SMARCA1P28370 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.96□□□□□ -1.62
SMARCA1P28370 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.96□□□□□ -1.62
SMARCA1P28370 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.96□□□□□ -1.62
SMARCA1P28370 AC136624.4-201ENST00000573044 370 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 DEFB131E-202ENST00000602581 683 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC080078.2-201ENST00000603766 501 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC087752.4-201ENST00000605911 462 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC012360.2-201ENST00000609349 391 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC104073.3-201ENST00000610942 955 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 MIR6716-201ENST00000613413 80 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC083809.1-201ENST00000615051 472 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 MLECP1-201ENST00000615893 709 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC009237.17-201ENST00000618111 748 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.96□□□□□ -1.62
SMARCA1P28370 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.96□□□□□ -1.62
SMARCA1P28370 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.96□□□□□ -1.62
SMARCA1P28370 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.96□□□□□ -1.62
SMARCA1P28370 PABPC1P9-201ENST00000426076 1612 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 AC011978.2-201ENST00000569835 2054 ntBASIC4.96□□□□□ -1.62
SMARCA1P28370 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SMARCA1P28370 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SMARCA1P28370 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 Y_RNA.359-201ENST00000365498 102 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AL583835.1-201ENST00000399570 407 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 RWDD4P2-201ENST00000426392 563 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AL365184.2-201ENST00000431139 435 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.95□□□□□ -1.62
SMARCA1P28370 MUPP-201ENST00000438111 566 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 ST13P20-201ENST00000447996 1065 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 RPL39P6-201ENST00000448289 150 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC097493.1-201ENST00000463958 372 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 UQCRHP4-201ENST00000471686 272 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC010301.1-201ENST00000473936 355 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SMARCA1P28370 PARP4P3-201ENST00000510265 317 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC099522.1-202ENST00000514718 367 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 MIR4697-201ENST00000582977 78 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL161729.3-201ENST00000603533 673 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC113194.1-201ENST00000606037 500 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 RNU6-88P-201ENST00000606801 100 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC010678.1-201ENST00000614118 713 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC006338.2-201ENST00000616864 791 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL445363.3-201ENST00000623080 671 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC025048.6-202ENST00000627667 438 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 AC008013.2-202ENST00000637965 364 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SMARCA1P28370 AL079343.1-201ENST00000572358 1771 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SMARCA1P28370 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.95□□□□□ -1.62
SMARCA1P28370 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
SMARCA1P28370 AC010300.1-201ENST00000600671 5134 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.95□□□□□ -1.62
SMARCA1P28370 SCN1A-220ENST00000641603 12506 ntBASIC4.95□□□□□ -1.62
SMARCA1P28370 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 MTND4P16-201ENST00000466108 1367 ntBASIC4.94□□□□□ -1.62
SMARCA1P28370 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SMARCA1P28370 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.94□□□□□ -1.62
SMARCA1P28370 MTCO1P23-201ENST00000415223 1526 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms