Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 AC011602.1-201ENST00000546484 331 ntBASIC3.34□□□□□ -1.87
SDC1P18827 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.34□□□□□ -1.87
SDC1P18827 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC1P18827 MIR3160-1-201ENST00000577972 85 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 MIR5047-201ENST00000579212 100 ntBASIC3.34□□□□□ -1.87
SDC1P18827 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.34□□□□□ -1.87
SDC1P18827 AC007566.2-201ENST00000603642 413 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL451086.1-201ENST00000605596 223 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL365400.2-201ENST00000605604 902 ntBASIC3.34□□□□□ -1.87
SDC1P18827 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC1P18827 U4.6-201ENST00000621618 127 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL157770.1-201ENST00000623049 439 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL355578.1-201ENST00000607405 1328 ntBASIC3.34□□□□□ -1.87
SDC1P18827 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.34□□□□□ -1.87
SDC1P18827 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.34□□□□□ -1.88
SDC1P18827 PWAR6-201ENST00000552334 4618 ntBASIC3.34□□□□□ -1.88
SDC1P18827 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.34□□□□□ -1.88
SDC1P18827 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.34□□□□□ -1.88
SDC1P18827 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 AL513302.2-201ENST00000562313 1842 ntBASIC3.33□□□□□ -1.88
SDC1P18827 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC1P18827 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 RNU4-51P-201ENST00000364206 140 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RNA5SP515-201ENST00000364570 118 ntBASIC3.33□□□□□ -1.88
SDC1P18827 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC1P18827 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SDC1P18827 RNU6-328P-201ENST00000390887 106 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC1P18827 BOLA3P4-201ENST00000418151 400 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC1P18827 AC005517.2-201ENST00000424673 553 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC1P18827 AP000907.1-201ENST00000428428 510 ntBASIC3.33□□□□□ -1.88
SDC1P18827 MTCO1P3-201ENST00000429327 192 ntBASIC3.33□□□□□ -1.88
SDC1P18827 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC1P18827 AL358794.1-201ENST00000445689 381 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AL590399.6-201ENST00000446396 307 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC079776.3-201ENST00000450665 370 ntBASIC3.33□□□□□ -1.88
SDC1P18827 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC1P18827 AC146507.1-201ENST00000468335 354 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC079203.1-201ENST00000487972 404 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RPL7P47-201ENST00000497299 556 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RNF138P1-201ENST00000502765 546 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC110768.1-201ENST00000509222 400 ntBASIC3.33□□□□□ -1.88
SDC1P18827 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC1P18827 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.33□□□□□ -1.88
SDC1P18827 RN7SKP21-201ENST00000516503 220 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RNA5SP309-201ENST00000516670 106 ntBASIC3.33□□□□□ -1.88
SDC1P18827 SNORA70.19-201ENST00000516717 90 ntBASIC3.33□□□□□ -1.88
SDC1P18827 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC1P18827 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC1P18827 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC1P18827 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC1P18827 AC093519.1-201ENST00000566109 298 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC005412.1-201ENST00000580812 1049 ntBASIC3.33□□□□□ -1.88
SDC1P18827 OR4G1P-201ENST00000588632 938 ntBASIC3.33□□□□□ -1.88
SDC1P18827 AC011458.1-201ENST00000604034 617 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RNA5SP108-201ENST00000605921 117 ntBASIC3.33□□□□□ -1.88
SDC1P18827 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC1P18827 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC1P18827 PART1_2.1-201ENST00000612397 250 ntBASIC3.33□□□□□ -1.88
SDC1P18827 CYCSP41-201ENST00000616920 296 ntBASIC3.33□□□□□ -1.88
SDC1P18827 ZNF663P-202ENST00000641770 1131 ntBASIC3.33□□□□□ -1.88
SDC1P18827 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 MFSD8-233ENST00000641482 4860 ntBASIC3.33□□□□□ -1.88
SDC1P18827 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC1P18827 DBF4P1-201ENST00000412976 1892 ntBASIC3.33□□□□□ -1.88
SDC1P18827 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC1P18827 AC090337.1-201ENST00000579651 2074 ntBASIC3.32□□□□□ -1.88
SDC1P18827 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC1P18827 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC1P18827 RNU6-251P-201ENST00000363235 104 ntBASIC3.32□□□□□ -1.88
SDC1P18827 RN7SKP280-201ENST00000364196 304 ntBASIC3.32□□□□□ -1.88
SDC1P18827 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SDC1P18827 SNORD65.1-201ENST00000390889 71 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AL355379.1-201ENST00000405542 640 ntBASIC3.32□□□□□ -1.88
SDC1P18827 RN7SKP263-201ENST00000411194 309 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AC092634.6-201ENST00000418558 192 ntBASIC3.32□□□□□ -1.88
SDC1P18827 RPL17P36-201ENST00000420302 549 ntBASIC3.32□□□□□ -1.88
SDC1P18827 HMGB3P5-201ENST00000428894 612 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 USP9YP7-201ENST00000436723 430 ntBASIC3.32□□□□□ -1.88
SDC1P18827 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AC104073.1-201ENST00000451988 151 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms