Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RN7SKP53-201ENST00000411337 315 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC098592.1-201ENST00000419352 333 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AL159987.2-201ENST00000432754 307 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AL596276.1-201ENST00000434465 418 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 MTCYBP34-201ENST00000439552 670 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 MTND2P24-201ENST00000453434 806 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 HMGB1P19-201ENST00000517578 577 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC124293.1-201ENST00000530034 493 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.83□□□□□ -1.64
COL3A1P02461 NBEAP1-201ENST00000554452 979 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.83□□□□□ -1.64
COL3A1P02461 KLKP1-201ENST00000595979 403 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AC133552.5-201ENST00000604266 540 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AL592221.1-201ENST00000605266 382 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
COL3A1P02461 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL3A1P02461 AC019080.5-201ENST00000624891 757 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 AL022311.1-201ENST00000623726 19416 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.83□□□□□ -1.64
COL3A1P02461 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
COL3A1P02461 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 MTND4P23-201ENST00000447723 1363 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 MIR365B-201ENST00000362317 111 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 Y_RNA.11-201ENST00000362375 109 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 RNA5SP42-201ENST00000364278 115 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 Y_RNA.248-201ENST00000364501 109 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 HMGN2P8-201ENST00000391458 268 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 ERHP2-201ENST00000402323 299 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 MTND3P23-201ENST00000431980 347 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 USP9YP35-201ENST00000435696 412 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC013410.1-201ENST00000436223 1232 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 USP9YP22-201ENST00000438971 294 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.82□□□□□ -1.64
COL3A1P02461 RPS27P5-201ENST00000444247 244 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 RPL21P23-201ENST00000446654 460 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AL592447.1-201ENST00000447592 540 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 RBMY2UP-201ENST00000453474 324 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC007967.1-201ENST00000455422 1159 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 CFTRP1-201ENST00000456646 183 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 RNU6-956P-201ENST00000458868 103 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.82□□□□□ -1.64
COL3A1P02461 FCF1P3-201ENST00000496394 590 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL3A1P02461 AC109471.1-201ENST00000511631 612 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.82□□□□□ -1.64
COL3A1P02461 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL3A1P02461 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.82□□□□□ -1.64
COL3A1P02461 VN1R83P-201ENST00000595685 445 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.82□□□□□ -1.64
COL3A1P02461 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC128687.1-201ENST00000605304 619 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC009237.15-201ENST00000610252 501 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC100793.4-201ENST00000613683 429 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC005858.4-201ENST00000623191 700 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.82□□□□□ -1.64
COL3A1P02461 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL3A1P02461 AC074029.4-201ENST00000624796 1859 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 ZNF833P-201ENST00000424938 1494 ntBASIC4.82□□□□□ -1.64
COL3A1P02461 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.82□□□□□ -1.64
COL3A1P02461 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.82□□□□□ -1.64
COL3A1P02461 RNU6-697P-201ENST00000363348 107 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 RNU6-157P-201ENST00000383957 107 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 MT-TH-201ENST00000387441 69 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 MTCO1P17-201ENST00000411522 491 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC092638.1-201ENST00000411966 1275 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 IPMKP1-201ENST00000425988 855 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL3A1P02461 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.81□□□□□ -1.64
COL3A1P02461 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.81□□□□□ -1.64
COL3A1P02461 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC4.81□□□□□ -1.64
COL3A1P02461 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC4.81□□□□□ -1.64
COL3A1P02461 APOOP2-201ENST00000461561 539 ntBASIC4.81□□□□□ -1.64
COL3A1P02461 SETP14-201ENST00000497538 873 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms