Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC025627.2-201ENST00000576220 160 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC022662.1-201ENST00000580252 331 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 VN1R79P-201ENST00000593540 513 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 VN1R85P-201ENST00000601587 426 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC128687.1-201ENST00000605304 619 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC243773.3-201ENST00000613270 256 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AP005264.7-201ENST00000625003 745 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC112200.1-201ENST00000625015 234 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS28Q9UK41 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC027287.1-201ENST00000553115 1453 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS28Q9UK41 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS28Q9UK41 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 RNA5SP283-201ENST00000365604 119 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 SNORA57.1-201ENST00000391227 145 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 PPIAP31-201ENST00000405422 495 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 RNU4-6P-201ENST00000410804 122 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 PGBD4P8-201ENST00000412993 562 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC092647.1-201ENST00000420654 287 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL391219.1-201ENST00000422570 483 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 GLRXP1-201ENST00000423261 334 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 TPTE2P3-201ENST00000441562 1189 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 TRGVB-201ENST00000453257 471 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 RPL21P134-201ENST00000453468 483 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 RPL18AP17-201ENST00000455326 198 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC114981.1-201ENST00000503897 678 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC109458.1-201ENST00000508858 316 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC079395.1-201ENST00000510981 262 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 RNU6-583P-201ENST00000516012 92 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 RNU6-27P-201ENST00000516146 107 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC104986.1-201ENST00000517978 436 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 OR5D17P-201ENST00000531492 978 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 REXO2-218ENST00000544827 880 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC084824.1-201ENST00000550917 1005 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC012182.1-201ENST00000570133 895 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC012417.1-201ENST00000582307 1039 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL020997.2-201ENST00000602607 184 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 DUXAP3-201ENST00000603616 594 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC009220.3-201ENST00000604318 586 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AL450336.1-201ENST00000605180 586 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC024941.1-201ENST00000612250 334 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC026368.1-201ENST00000614934 690 ntBASIC4.17□□□□□ -1.74
VPS28Q9UK41 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS28Q9UK41 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS28Q9UK41 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VPS28Q9UK41 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS28Q9UK41 USP8P1-201ENST00000494673 3183 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS28Q9UK41 SNORA51.2-201ENST00000364595 132 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 RNU6-629P-201ENST00000384061 103 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 RNU6-1181P-201ENST00000384191 106 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 RNU2-15P-201ENST00000410692 191 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL592310.1-201ENST00000414330 671 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 SSR1P2-201ENST00000415208 787 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 TOMM22P1-201ENST00000418578 312 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 TIMM9P2-201ENST00000419324 266 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL049610.1-201ENST00000423374 372 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL691449.1-201ENST00000426570 421 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 ATP5F1P1-201ENST00000433775 569 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 MTND4P6-201ENST00000438297 472 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.16□□□□□ -1.74
VPS28Q9UK41 AL133477.1-201ENST00000457472 514 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 snoU109.4-201ENST00000458953 143 ntBASIC4.16□□□□□ -1.74
VPS28Q9UK41 MTCO3P35-201ENST00000485582 781 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms