Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 SCN1A-220ENST00000641603 12506 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RNU6-462P-201ENST00000362659 105 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RN7SKP160-201ENST00000363804 340 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.184-201ENST00000363884 108 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.193-201ENST00000363979 102 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RNU4-31P-201ENST00000384211 141 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RNU6-809P-201ENST00000384461 107 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL162578.1-201ENST00000406202 378 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL390316.1-201ENST00000406279 553 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 U3.32-201ENST00000408116 212 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.608-201ENST00000410647 95 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RNA5SP498-201ENST00000411342 120 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL139128.1-201ENST00000413921 941 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 CFL1P1-202ENST00000432948 411 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 MTND2P29-201ENST00000438595 412 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC104306.1-201ENST00000449702 371 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 DNAJC19P8-201ENST00000452887 259 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC027575.1-201ENST00000481064 460 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC098799.3-201ENST00000506095 438 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC104136.1-201ENST00000512969 394 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RFPL4AP5-201ENST00000514977 504 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 RNU2-46P-201ENST00000517038 113 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC005668.1-201ENST00000571142 476 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC141257.3-201ENST00000572906 215 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 SS18L2P2-201ENST00000583960 235 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 FKBP1AP1-201ENST00000594588 318 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AL365434.2-201ENST00000607979 234 ntBASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC39Q9UFE4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.84□□□□□ -1.48
CCDC39Q9UFE4 AP000542.2-201ENST00000623199 6179 ntBASIC5.84□□□□□ -1.48
CCDC39Q9UFE4 NMD3P1-201ENST00000439704 1488 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC107982.1-201ENST00000507171 1300 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 OR5J1P-201ENST00000313544 939 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RNA5SP183-201ENST00000362452 119 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RNA5SP435-201ENST00000364044 108 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.445-201ENST00000384168 102 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RNU6-74P-201ENST00000384235 107 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MIR600-201ENST00000385007 98 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MIR16-1-201ENST00000385271 89 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MT-TG-201ENST00000387429 68 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC092745.2-202ENST00000411880 369 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 CHEK2P5-201ENST00000423877 246 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC108075.1-201ENST00000424692 529 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL731563.1-201ENST00000442202 214 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RPL7AP61-201ENST00000443410 636 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL035551.1-201ENST00000446931 348 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 MTND1P12-201ENST00000455231 147 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC022795.1-201ENST00000473808 480 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC034159.1-201ENST00000513885 583 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RPL23AP53-201ENST00000521854 457 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC025260.1-201ENST00000548858 430 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms