Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC087821.2-201ENST00000637086 450 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 AC013437.2-201ENST00000639587 677 ntBASIC3.57□□□□□ -1.84
LHX3Q9UBR4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LHX3Q9UBR4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 FAM35DP-201ENST00000323387 2712 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 XIAPP3-201ENST00000312918 795 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 MIR217-201ENST00000384817 110 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC093578.1-201ENST00000415219 368 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 FCF1P2-201ENST00000415284 583 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 Z93242.1-201ENST00000427102 353 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC005345.1-201ENST00000431868 217 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 MRPS18BP2-201ENST00000434310 759 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC078817.1-201ENST00000492623 435 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC110768.1-201ENST00000509222 400 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 IGKV2D-36-201ENST00000518643 226 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AP000790.1-201ENST00000528891 737 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC007458.1-201ENST00000542812 373 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 YWHAZP1-201ENST00000556286 722 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 SNORD39.3-201ENST00000584451 71 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL606834.3-201ENST00000602615 496 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 GAS5-AS1-201ENST00000602767 694 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC073387.2-201ENST00000604797 784 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 MIR92B-201ENST00000607575 96 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL513477.2-201ENST00000607858 568 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL592148.2-201ENST00000612210 372 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC138649.5-201ENST00000637456 137 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 AL049781.1-201ENST00000623195 3585 ntBASIC3.56□□□□□ -1.84
LHX3Q9UBR4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
LHX3Q9UBR4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MFSD8-233ENST00000641482 4860 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 ZNF734P-201ENST00000419494 1534 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 CEP170P1-201ENST00000502249 4587 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 RNA5SP502-201ENST00000362694 119 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 RNU6-374P-201ENST00000364146 108 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 RNA5SP167-201ENST00000365461 116 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 Y_RNA.578-201ENST00000390903 88 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 EIF5P1-201ENST00000400019 1231 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 MTND4P3-201ENST00000417829 541 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 OFD1P18Y-201ENST00000420889 959 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 SNRPGP5-201ENST00000456003 220 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AL133477.1-201ENST00000457472 514 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC025518.1-201ENST00000479856 347 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 SETP14-201ENST00000497538 873 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 CAB39P1-201ENST00000502277 460 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 DEFB130C-202ENST00000530001 230 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 LRRC6P1-201ENST00000532188 885 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC053481.3-201ENST00000577881 843 ntBASIC3.55□□□□□ -1.84
LHX3Q9UBR4 AC005412.1-201ENST00000580812 1049 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms