Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 AL122126.1-201ENST00000546905 1318 ntBASIC3.18□□□□□ -1.9
TREX1Q9NSU2 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
TREX1Q9NSU2 AL079305.1-201ENST00000623159 3008 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 METTL21EP-201ENST00000298105 713 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 BTBD10P2-201ENST00000404779 676 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 MIR1250-201ENST00000408098 113 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 RN7SKP27-201ENST00000410684 333 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 RPF2P1-201ENST00000424137 906 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 TRIAP1P1-201ENST00000427062 225 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC005300.1-201ENST00000428401 373 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 HIGD1AP11-201ENST00000438361 280 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 RPS27P29-201ENST00000463110 252 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 HMGB1P38-201ENST00000490557 577 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC021146.5-201ENST00000503544 545 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 KCTD9P5-201ENST00000504141 1170 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC110794.1-201ENST00000505816 425 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 MTND2P26-201ENST00000528255 1029 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 KATNBL1P1-201ENST00000605192 748 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AL356490.1-201ENST00000623079 479 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 MTCO1P12-201ENST00000414273 1543 ntBASIC3.17□□□□□ -1.9
TREX1Q9NSU2 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
TREX1Q9NSU2 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 XPOTP1-201ENST00000443317 2398 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AP001350.1-201ENST00000601906 1524 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 MIR148B-201ENST00000362252 99 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 TAF9BP2-201ENST00000400856 499 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AL583834.1-201ENST00000406943 343 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 RNU2-21P-201ENST00000410368 188 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 MTND4P24-201ENST00000424002 397 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 PRDX3P3-201ENST00000447765 522 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 RPL21P8-201ENST00000465083 535 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AP002884.2-201ENST00000471647 395 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC093663.2-201ENST00000484625 313 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 MTCO3P35-201ENST00000485582 781 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 RNU6-1073P-201ENST00000517182 106 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC104115.2-201ENST00000523026 687 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 OR5AK3P-201ENST00000527486 1297 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC139103.1-201ENST00000534696 1030 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 MIR4444-1-201ENST00000581696 74 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 MIR4444-2-201ENST00000584390 74 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.16□□□□□ -1.9
TREX1Q9NSU2 NTAN1P1-201ENST00000603150 646 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 AC090617.9-201ENST00000623751 147 ntBASIC3.16□□□□□ -1.9
TREX1Q9NSU2 U6.107-201ENST00000637108 79 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms