Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC079315.1-201ENST00000602952 623 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 ATP1B3P1-201ENST00000605365 821 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC007619.2-201ENST00000605743 379 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AL021918.2-201ENST00000613415 194 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 SDR42E1P2-201ENST00000614861 481 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC006065.5-201ENST00000623427 349 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC073593.1-201ENST00000624500 411 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC026523.2-201ENST00000625039 7739 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 MTND4P27-201ENST00000450813 1354 ntBASIC4.63□□□□□ -1.67
CCDC140Q96MF4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC140Q96MF4 AC104966.1-201ENST00000467010 1464 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 SOCS5P3-201ENST00000425115 1576 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 Y_RNA.315-201ENST00000365117 102 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 GNG5P2-201ENST00000372054 207 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RNU6-1074P-201ENST00000383995 104 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RNU6-882P-201ENST00000391025 103 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC004386.1-201ENST00000393214 761 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 BX682237.1-201ENST00000415016 335 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC092809.3-201ENST00000415453 231 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC099677.3-201ENST00000427081 395 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RPL21P112-201ENST00000434403 463 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL445928.1-201ENST00000435545 222 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 H3F3BP1-201ENST00000440551 403 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL359073.1-201ENST00000448036 403 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RN7SL269P-201ENST00000467795 305 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC027575.1-201ENST00000481064 460 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RN7SL170P-201ENST00000487098 295 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RN7SL591P-201ENST00000496150 292 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 KLHL2P1-201ENST00000508691 521 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL671862.1-201ENST00000515851 349 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RN7SKP24-201ENST00000515888 284 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RN7SKP60-201ENST00000516985 239 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 IGHVII-60-1-201ENST00000519079 256 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL163952.1-202ENST00000569625 600 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 MIR3672-201ENST00000584290 82 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC104763.2-201ENST00000604179 382 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL627309.6-201ENST00000606857 840 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC007546.1-201ENST00000619452 559 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL136228.1-201ENST00000622221 319 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 OR52H1-202ENST00000641796 1061 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AC121333.1-201ENST00000567488 2709 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 AL592437.2-201ENST00000421655 2434 ntBASIC4.62□□□□□ -1.67
CCDC140Q96MF4 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
CCDC140Q96MF4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC116667.1-201ENST00000604855 2072 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AL161756.3-201ENST00000641216 2071 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC140Q96MF4 AC100757.1-201ENST00000616872 1835 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 MIR369-201ENST00000362155 70 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RNU6-254P-201ENST00000363377 107 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 Y_RNA.339-201ENST00000365325 102 ntBASIC4.61□□□□□ -1.67
CCDC140Q96MF4 RNU6-43P-201ENST00000384302 107 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms