Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 TRAV37-201ENST00000553906 342 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 YWHAZP1-201ENST00000556286 722 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC044913.1-201ENST00000557200 430 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL022067.1-201ENST00000602426 454 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL020997.2-201ENST00000602607 184 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL606834.3-201ENST00000602615 496 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL158050.2-201ENST00000605336 568 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL583856.2-201ENST00000606298 543 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC092953.2-201ENST00000608000 699 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC006065.5-201ENST00000623427 349 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SKA3Q8IX90 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 NMD3P1-201ENST00000439704 1488 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL645568.2-201ENST00000432815 1337 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
SKA3Q8IX90 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SKA3Q8IX90 ANKRD36P1-201ENST00000344424 659 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SKA3Q8IX90 SNORD3H-201ENST00000384486 214 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 SNORA70E-201ENST00000384492 135 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC025750.1-201ENST00000399891 379 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 RPS7P9-201ENST00000414704 586 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 RPL17P36-201ENST00000420302 549 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC009237.2-201ENST00000421358 284 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC233981.1-201ENST00000423224 461 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 PSMA2P3-201ENST00000429685 675 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL445584.1-201ENST00000431451 330 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 HSFY7P-201ENST00000432672 318 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 HSFY8P-201ENST00000437934 318 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 NOTCH2P1-201ENST00000443481 624 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 HSFY5P-201ENST00000453726 309 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC020898.1-201ENST00000474167 787 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC092185.1-201ENST00000491371 97 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 HIGD1AP3-201ENST00000515857 278 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 RNU2-58P-201ENST00000516403 183 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC019227.1-201ENST00000526902 510 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 TRAV15-201ENST00000556680 249 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 ZNF192P1-203ENST00000565888 810 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC122134.1-202ENST00000569111 1201 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 MIR4738-201ENST00000579134 87 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 MIR4666A-201ENST00000580160 79 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC093227.2-201ENST00000589357 285 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 YWHAQP7-201ENST00000603536 658 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL391834.2-201ENST00000609982 546 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC084824.4-201ENST00000620106 731 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 SNORA50A-202ENST00000629536 136 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 AP000553.6-201ENST00000641242 118 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 OR6C71P-202ENST00000641886 1107 ntBASIC3.22□□□□□ -1.89
SKA3Q8IX90 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.22□□□□□ -1.89
SKA3Q8IX90 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.21□□□□□ -1.89
SKA3Q8IX90 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC007066.1-201ENST00000392902 381 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL139098.1-201ENST00000407291 389 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC073264.1-201ENST00000411508 416 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 RPL36AP36-201ENST00000418616 301 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC245054.1-201ENST00000420944 258 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC092017.2-201ENST00000427600 362 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC099563.1-201ENST00000456086 418 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC087312.1-201ENST00000471411 480 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 RPS4XP22-201ENST00000480755 780 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 GAPDHP39-201ENST00000481866 979 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms