Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 CR382285.2-201ENST00000624662 1495 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AL133412.1-201ENST00000380194 2992 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 MTCO3P31-201ENST00000405526 789 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 RNA5SP107-201ENST00000411358 122 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AL034379.1-201ENST00000423216 253 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 MRPS33P4-201ENST00000434892 317 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AGGF1P8-201ENST00000562979 1000 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AC122134.1-201ENST00000565664 1104 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 MIR6817-201ENST00000615588 66 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AC095050.2-201ENST00000510748 1458 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AC134882.1-201ENST00000603738 1676 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AL356057.3-201ENST00000402607 340 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 RAP1BP1-201ENST00000412709 553 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AC008549.1-201ENST00000512900 643 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 Y_RNA.676-201ENST00000516393 96 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 VTA1P2-201ENST00000520205 911 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 PDCD5P1-201ENST00000543528 309 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 VN1R79P-201ENST00000593540 513 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AC017076.1-201ENST00000607613 578 ntBASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
CCDC88AQ3V6T2 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 MTCO1P39-201ENST00000426148 480 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 SNRPFP2-201ENST00000440710 251 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 TXNP6-201ENST00000510190 310 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AP000867.2-201ENST00000532468 320 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AL442163.2-201ENST00000553912 710 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 DEFB122-202ENST00000569013 197 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AL713998.2-201ENST00000604538 1198 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 OR6R2P-201ENST00000609216 300 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AL589994.1-201ENST00000404962 340 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 RPL23AP4-201ENST00000427757 463 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 RN7SL633P-201ENST00000488974 297 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 EEF1A1P37-201ENST00000522748 715 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AL355493.4-201ENST00000618530 292 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AP006248.2-201ENST00000623309 592 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 AC241585.2-209ENST00000638217 143 ntBASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.41□□□□□ -1.86
CCDC88AQ3V6T2 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC88AQ3V6T2 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
CCDC88AQ3V6T2 MRPL50P2-201ENST00000416821 482 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 B3GNT2P1-201ENST00000434960 952 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AC016687.1-201ENST00000482574 353 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AP001025.2-201ENST00000490908 477 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AC009159.1-201ENST00000618386 642 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AC107081.3-201ENST00000612715 2034 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 AC090229.1-201ENST00000590983 1609 ntBASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.4□□□□□ -1.87
CCDC88AQ3V6T2 SNORD114-30-201ENST00000364448 72 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 OR2AS1P-201ENST00000427827 319 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 MTCO1P52-201ENST00000433928 531 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC003982.1-202ENST00000469928 248 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC118282.1-201ENST00000506408 765 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC119751.1-201ENST00000513357 765 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 MIR4648-201ENST00000580107 72 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC098826.3-201ENST00000603823 466 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 RNU6-1263P-201ENST00000384601 106 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 RPL5P19-201ENST00000404228 893 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms