Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC004908.3-201ENST00000610248 625 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC006065.6-201ENST00000625201 545 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 ZNF542P-204ENST00000482727 1305 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 FAM91A3P-201ENST00000456826 2544 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 SNORD74.4-201ENST00000364129 80 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL024474.1-201ENST00000404655 591 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 RAB9AP3-201ENST00000412737 573 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 MTND4P20-201ENST00000424125 869 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 BTF3P10-201ENST00000433415 495 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 MTND4P6-201ENST00000438297 472 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL354941.1-201ENST00000438600 464 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC092427.1-201ENST00000439177 601 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 MTND5P2-201ENST00000442927 1142 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 VN1R10P-201ENST00000447106 875 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 RPL39P6-201ENST00000448289 150 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 RAB9AP1-201ENST00000449393 573 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC092757.1-201ENST00000467293 467 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC147055.4-201ENST00000504399 745 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC092470.1-201ENST00000546187 132 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC008127.2-201ENST00000549925 1075 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 ISCA1P3-201ENST00000577104 373 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 HMGB2P1-201ENST00000591146 634 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL606490.9-201ENST00000603331 271 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC004987.4-201ENST00000603383 338 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC106791.2-201ENST00000604680 391 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC010680.4-201ENST00000605334 543 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL121772.2-201ENST00000614331 297 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC026368.1-201ENST00000614934 690 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL136981.2-201ENST00000617319 734 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 MIR4727-201ENST00000622232 55 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC103706.2-201ENST00000638080 240 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AL079343.1-201ENST00000572358 1771 ntBASIC4.14□□□□□ -1.75
COL28A1Q2UY09 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL28A1Q2UY09 AC090229.1-201ENST00000590983 1609 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR5H2-201ENST00000355273 945 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 RNA5SP22-201ENST00000365393 109 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 SNORA70E-201ENST00000384492 135 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 MIR218-2-201ENST00000385006 110 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 RAC1P3-201ENST00000416129 580 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 RPL21P91-201ENST00000429231 479 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 RPL23AP52-201ENST00000439311 478 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms